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Figure 4 | BMC Genomics

Figure 4

From: RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

Figure 4

(A) Clustering of COG1491, COG1901 and COG1444 with translation gene. 1 = KsgA [Dimethyladenosine transferase (EC 2.1.1.-)]; 2 = HemK (Methylase of polypeptide chain release factors); 3 = L21p (LSU ribosomal protein L21p); 4 = PsuX (Pus10 family see [98] and text); 5 = YhfQ (methylase potentialy involve in Cm32 methylation of tRNA, see text); 6 = S3Ae (SSU ribosomal protein S3Ae);7 = Ef1b (Translation elongation factor 1 beta subunit) (B) Clustering of Tuc1, Elp3 and Trm9 family genes with sulfur transfer enzymes encoding genes (see text for abbreviations).(C) Clustering of COG1571 with RNA processing genes Tgt = tRNA-guanine transglycosylase; LigT = 2'-5' RNA ligase (EC 6.5.1.-); Trm5 = tRNA (Guanine37-N1)-methyltransferase (EC 2.1.1.31); TruD = tRNA pseudouridine 13 synthase (EC 4.2.1.-). The full analysis is available in the "Archaeal tRNA modification" and "Archaeal rRNA modification" subsystems in the SEED database.

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