Position | Modification | Prediction method | Hv orfa | COG | Commentsb |
---|---|---|---|---|---|
5S | Â | Â | Â | Â | Â |
None | None | Â | Â | Â | Â |
16S C | Â | Â | Â | Â | Â |
910 (966) | acp3U | Prediction this work | HVO_0390 | 2016 | See text, 1Q7H |
1352 (1404) | C* = N330 | Â | ? | ? | See text |
1432 (1500) | m6A | Prediction this work | HVO_1475 | 2263 | See text, 1QAN |
1450+1451 (1518+1519) | m62A | Homology with M. jannaschii RsmA* [137] | HVO_2746 | 0030 | Â |
23S Data From H. marismortuiD | Â | Â | Â | Â | Â |
628 (571) | m1A | Prediction, weak homology with E. coli RlmA [146] | HVO_0309 | 2226 | Â |
1950 (1909) | Gm | aFib+ sRNA | Â | Â | See Additional file 8 |
1956+1958 (1915+1917) | Ψ,Ψ | Cbf5+ sRNA |  |  | See Additional file 8 |
2587 (2552) | Um | Homology with E. coli RlmE [138] | HVO_0180 | 1189 | Â |
2588 (2553) | Gm | Prediction RlmE? | HVO_0180 | 1189 | See text |
2619 (2584) | m3U | Prediction, this work and [93] | HVO_2565 | 2016 | See text, 1K3R |
2621 (2586) | Ψ | Cbf5+ sRNA |  |  | See Additional file 8 |
Guide RNA protein machinery | Â | Â | Â | Â | Â |
Cbf5 | Â | Homology P. furiosus Cbf5* [183] | HVO_2493 | 0103 | 2AUS, 2RFK, 2APO |
Gar1p | Â | Homology P. furiosus Gar1p* [183] | HVO_1108 | 3277 | 2HVY, 2EY4 2RFK |
Nop10 | Â | Homology P. furiosus Nop10* [183] | HVO_0698 | 2260 | 2AUS |
L7Ae | Â | Homology S. solfataricus L7* [184] | HVO_2737 | 1358 | 1PXW, 2FC3, 1RLG, 1SDS, 2QA4 |
Fibrillarin | Â | Homology with S. solfataricus aFib* [184] | HVO_1669 | 1889 | 1NT2, 1PRY 1G8S, 1FBN, 1G8A |
Nop56/58 | Â | Homology S. solfataricus Nop56/58* [184] | HVO_1670 | 1498 | 1NT2 |