Skip to main content

Table 2 Summary of 40 most abundant antisense UniGenes

From: Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription

UniGene

Annotation

Functional category

total tag count

PM

FM

Sense tag(s) Present?

gnl|UG|Ta#S17980503

no hit

Unknown

374

0

2

No

gnl|UG|Ta#S12872250

no hit

Unknown

338

0

4

No

gnl|UG|Ta#S12922882

Alpha/beta-gliadin A-II precursor (Prolamin)

Storage

238

5

5

Yes

gnl|UG|Ta#S32420068

PREDICTED: similar to rRNA intron-encoded homing endonuclease

Reproduction

190

1

3

Yes

gnl|UG|Ta#S32610130

no hit

Unknown

166

0

1

No

gnl|UG|Ta#S18010719

putative inositol-(1,4,5) trisphosphate 3-kinase [Oryza sativa]

Signalling

97

0

1

No

gnl|UG|Ta#S16057965

putative argonaute protein [Oryza sativa]

Reproduction

85

0

2

No

gnl|UG|Ta#S17985265

putative AT-hook DNA-binding protein [Oryza sativa]

Reproduction

84

0

1

No

gnl|UG|Ta#S15823985

no hit

Unknown

83

0

1

No

gnl|UG|Ta#S12923304

gamma-gliadin [Triticum aestivum]

Storage

64

5

0

Yes

gnl|UG|Ta#S26027296

UBX domain, putative [Oryza sativa (japonica cultivar-group)]

Unknown

60

0

1

No

gnl|UG|Ta#S12923123

gliadin gamma

Storage

56

3

0

Yes

gnl|UG|Ta#S12923126

low molecular weight glutenin subunit LMW-Di31 [Triticum turgidum]

Storage

48

1

1

Yes

gnl|UG|Ta#S17988646

putative glucose-6-phosphate dehydrogenase [Oryza sativa]

Metabolism

47

0

1

No

gnl|UG|Ta#S19133035

low-molecular-weight glutenin subunit group 3 type II

Storage

46

5

0

Yes

gnl|UG|Ta#S16466298

no hit

Unknown

44

0

2

No

gnl|UG|Ta#S22389847

no hit

Unknown

39

0

2

Yes

gnl|UG|Ta#S12922884

alpha-gliadin [Triticum aestivum]

Storage

35

1

0

Yes

gnl|UG|Ta#S32643313

OSJNBa0070C17.22 (CpG binding domain*)

Reproduction

34

0

2

No

gnl|UG|Ta#S13111511

wound-inducible basic protein – kidney bean

Defense

30

0

1

No

gnl|UG|Ta#S18010204

choline kinase [Oryza sativa]

Membrane

29

0

1

No

gnl|UG|Ta#S13179349

no hit

Unknown

27

0

3

No

gnl|UG|Ta#S13005586

gamma-gliadin [Triticum aestivum]

Storage

25

1

0

Yes

gnl|UG|Ta#S15880157

no hit

Unknown

24

1

0

Yes

gnl|UG|Ta#S17883810

putative serine/threonine protein phosphatase PP1 [Oryza sativa]

Signalling

23

0

1

No

gnl|UG|Ta#S12966614

putative receptor protein kinase PERK1 [Oryza sativa]

Signalling

23

0

1

No

gnl|UG|Ta#S32583944

unknown protein [Oryza sativa]

Unknown

21

0

1

No

gnl|UG|Ta#S16191894

putative wall-associated protein kinase [Oryza sativa]

Signalling

21

0

2

No

gnl|UG|Ta#S12923306

gamma-gliadin [Triticum aestivum]

Storage

21

3

1

Yes

gnl|UG|Ta#S17975314

no hit

Unknown

20

0

1

No

gnl|UG|Ta#S32572951

Nucleolar GTP-binding protein 1-like [Oryza sativa]

Signalling

20

0

1

No

gnl|UG|Ta#S22379110

putative branched-chain alpha-keto acid decarboxylase E1 beta

Cell Wall

20

0

1

No

gnl|UG|Ta#S12917789

no hit

Unknown

20

0

1

No

gnl|UG|Ta#S16228057

no hit

Unknown

20

0

1

Yes

gnl|UG|Ta#S22368491

protein phosphatase 2C, putative, expressed [Oryza sativa]

Signalling

19

0

1

No

gnl|UG|Ta#S16058509

high-molecular-weight glutenin subunit Bx17 [Triticum aestivum]

Storage

19

1

1

Yes

gnl|UG|Ta#S12932494

unknown protein; 58745–68005 [Arabidopsis thaliana]

Unknown

19

0

1

Yes

gnl|UG|Ta#S32736316

no hit

Unknown

18

1

0

No

gnl|UG|Ta#S17886389

LacZ-alpha [Shuttle vector pLPV111]

Unknown

18

1

1

No

gnl|UG|Ta#S32503514

DNA polymerase delta small subunit, putative, expressed

Reproduction

18

0

1

No

  1. PM – Unique perfect match tags.
  2. FM – Unique fuzzy matched tags
  3. * – Annotation obtained by manual search