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Table 2 Summary of 40 most abundant antisense UniGenes

From: Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription

UniGene Annotation Functional category total tag count PM FM Sense tag(s) Present?
gnl|UG|Ta#S17980503 no hit Unknown 374 0 2 No
gnl|UG|Ta#S12872250 no hit Unknown 338 0 4 No
gnl|UG|Ta#S12922882 Alpha/beta-gliadin A-II precursor (Prolamin) Storage 238 5 5 Yes
gnl|UG|Ta#S32420068 PREDICTED: similar to rRNA intron-encoded homing endonuclease Reproduction 190 1 3 Yes
gnl|UG|Ta#S32610130 no hit Unknown 166 0 1 No
gnl|UG|Ta#S18010719 putative inositol-(1,4,5) trisphosphate 3-kinase [Oryza sativa] Signalling 97 0 1 No
gnl|UG|Ta#S16057965 putative argonaute protein [Oryza sativa] Reproduction 85 0 2 No
gnl|UG|Ta#S17985265 putative AT-hook DNA-binding protein [Oryza sativa] Reproduction 84 0 1 No
gnl|UG|Ta#S15823985 no hit Unknown 83 0 1 No
gnl|UG|Ta#S12923304 gamma-gliadin [Triticum aestivum] Storage 64 5 0 Yes
gnl|UG|Ta#S26027296 UBX domain, putative [Oryza sativa (japonica cultivar-group)] Unknown 60 0 1 No
gnl|UG|Ta#S12923123 gliadin gamma Storage 56 3 0 Yes
gnl|UG|Ta#S12923126 low molecular weight glutenin subunit LMW-Di31 [Triticum turgidum] Storage 48 1 1 Yes
gnl|UG|Ta#S17988646 putative glucose-6-phosphate dehydrogenase [Oryza sativa] Metabolism 47 0 1 No
gnl|UG|Ta#S19133035 low-molecular-weight glutenin subunit group 3 type II Storage 46 5 0 Yes
gnl|UG|Ta#S16466298 no hit Unknown 44 0 2 No
gnl|UG|Ta#S22389847 no hit Unknown 39 0 2 Yes
gnl|UG|Ta#S12922884 alpha-gliadin [Triticum aestivum] Storage 35 1 0 Yes
gnl|UG|Ta#S32643313 OSJNBa0070C17.22 (CpG binding domain*) Reproduction 34 0 2 No
gnl|UG|Ta#S13111511 wound-inducible basic protein – kidney bean Defense 30 0 1 No
gnl|UG|Ta#S18010204 choline kinase [Oryza sativa] Membrane 29 0 1 No
gnl|UG|Ta#S13179349 no hit Unknown 27 0 3 No
gnl|UG|Ta#S13005586 gamma-gliadin [Triticum aestivum] Storage 25 1 0 Yes
gnl|UG|Ta#S15880157 no hit Unknown 24 1 0 Yes
gnl|UG|Ta#S17883810 putative serine/threonine protein phosphatase PP1 [Oryza sativa] Signalling 23 0 1 No
gnl|UG|Ta#S12966614 putative receptor protein kinase PERK1 [Oryza sativa] Signalling 23 0 1 No
gnl|UG|Ta#S32583944 unknown protein [Oryza sativa] Unknown 21 0 1 No
gnl|UG|Ta#S16191894 putative wall-associated protein kinase [Oryza sativa] Signalling 21 0 2 No
gnl|UG|Ta#S12923306 gamma-gliadin [Triticum aestivum] Storage 21 3 1 Yes
gnl|UG|Ta#S17975314 no hit Unknown 20 0 1 No
gnl|UG|Ta#S32572951 Nucleolar GTP-binding protein 1-like [Oryza sativa] Signalling 20 0 1 No
gnl|UG|Ta#S22379110 putative branched-chain alpha-keto acid decarboxylase E1 beta Cell Wall 20 0 1 No
gnl|UG|Ta#S12917789 no hit Unknown 20 0 1 No
gnl|UG|Ta#S16228057 no hit Unknown 20 0 1 Yes
gnl|UG|Ta#S22368491 protein phosphatase 2C, putative, expressed [Oryza sativa] Signalling 19 0 1 No
gnl|UG|Ta#S16058509 high-molecular-weight glutenin subunit Bx17 [Triticum aestivum] Storage 19 1 1 Yes
gnl|UG|Ta#S12932494 unknown protein; 58745–68005 [Arabidopsis thaliana] Unknown 19 0 1 Yes
gnl|UG|Ta#S32736316 no hit Unknown 18 1 0 No
gnl|UG|Ta#S17886389 LacZ-alpha [Shuttle vector pLPV111] Unknown 18 1 1 No
gnl|UG|Ta#S32503514 DNA polymerase delta small subunit, putative, expressed Reproduction 18 0 1 No
  1. PM – Unique perfect match tags.
  2. FM – Unique fuzzy matched tags
  3. * – Annotation obtained by manual search