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Table 2 Effect of cichoric acid on gene expression in human iDCs

From: Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells

   

Fold Change

Gene Name

Common Name

Accession No

Treatment/Control

   

(From 18 to 2.6-fold)

(A) Up-regulated at 4 h post-treatment

discs, large (Drosophila) homolog 1

DLG1

NM_004087

18.24

pre-B-cell leukemia transcription factor 2

PBX2

NM_002586

6.45

inhibitor of DNA binding 4, dominant negative helix-loop-helix protein

ID4

NM_001546

4.22

contactin associated protein-like 2

CNTNAP2

NM_014141

4.00

DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54 kDa)

DDX6

NM_004397

3.74

guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1

GNAI1

NM_002069

3.66

tropomodulin 3 (ubiquitous)

TMOD3

NM_014547

3.60

tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)

TFPI

NM_006287

3.13

tolloid-like 1

TLL1

NM_012263

3.09

RAB3 GTPase-activating protein

RAB3GAP

XM_040048

3.08

histone 1, H2al

HIST1H2AL

NM_003511

3.07

solute carrier family 4, sodium bicarbonate cotransporter, member 7

SLC4A7

NM_003615

3.00

fibulin 1

FBLN1

NM_006486

2.97

cytochrome P450, family 2, subfamily C, polypeptide 8

CYP2C8

NM_030878

2.86

peptidyl-prolyl isomerase G (cyclophilin G)

PPIG

NM_004792

2.80

Nijmegen breakage syndrome 1 (nibrin)

NBS1

AK001017

2.76

NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8 kDa

NDUFB2

NM_004546

2.71

cytosolic ovarian carcinoma antigen 1

COVA1

NM_006375

2.69

zinc finger protein 305

ZNF305

NM_014724

2.67

platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30 kDa

PAFAH1B2

NM_002572

2.60

Down-regulated at 4 h post-treatment

(From 0.23 to 0.45-fold)

glycerol kinase

GK

NM_000167

0.23

SMC4 structural maintenance of chromosomes 4-like 1 (yeast)

SMC4L1

AL136877

0.31

ATPase, Ca+2 transporting, type 2C, member 1

ATP2C1

AB037768

0.36

megakaryocyte-associated tyrosine kinase

MATK

NM_002378

0.37

ubiquitin specific protease 24

USP24

XM_165973

0.37

SEC24 related gene family, member D (S. cerevisiae)

SEC24D

NM_014822

0.38

talin 1

TLN1

NM_006289

0.39

methionyl aminopeptidase 2

METAP2

NM_006838

0.39

protein kinase, cAMP-dependent, regulatory, type II, beta

PRKAR2B

NM_002736

0.42

endothelial differentiation, G-protein-coupled receptor, 2

EDG2

NM_001401

0.42

integrin, beta 8

ITGB8

NM_002214

0.42

uridine monophosphate synthetase

UMPS

NM_000373

0.42

ribosomal protein L13

RPL13

AA789278

0.43

DNA cross-link repair 1B

DCLRE1B

NM_022836

0.43

chloride channel, calcium activated, family member 2

CLCA2

NM_006536

0.43

caspase 2, apoptosis-related cysteine protease

CASP2

NM_032982

0.44

apoptotic chromatin condensation inducer in the nucleus

ACINUS

NM_014977

0.45

peptidoglycan recognition protein-I-beta precursor

PGLYRPIBETA

NM_020393

0.45

   

Fold Change

Gene Name

Common Name

Accession No

Treatment/Control

   

(From 18.9 to 5.4-fold)

(B) Up-regulated at 24 h post-treatment

 

Zinc finger protein 229

ZNF228

AC084239

18.93

adaptor-related protein complex 4, sigma 1 subunit

AP4S1

NM_007077

14.10

chromosome 8 open reading frame 17

C8ORF17

NM_020237

12.13

DKFZP566K023 protein

DKFZP566K023

NM_015485

11.07

glycine receptor, alpha 1

GLRA1

NM_000171

10.81

frizzled homolog 3 (Drosophila)

FZD3

NM_017412

10.31

secreted frizzled-related protein 1

SFRP1

NM_003012

10.11

chorea acanthocytosis

CHAC

AB023203

9.56

actin, alpha, cardiac muscle

ACTC

NM_005159

9.51

tripartite motif-containing 45

TRIM45

NM_025188

8.26

phosphodiesterase 4D, cAMP-specific

PDE4D

AF012073

8.23

v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog

KRAS2

NM_004985

7.79

absent in melanoma 1-like

AIM1L

NM_017977

6.79

protein phosphatase 2, regulatory subunit B, beta isoform

PPP2R2B

NM_004576

6.75

integral membrane protein 2A

ITM2A

AL021786

6.43

cannabinoid receptor 1 (brain)

CNR1

U73304

6.09

cholinergic receptor, nicotinic, alpha polypeptide 5

CHRNA5

NM_000745

6.02

SMC5 structural maintenance of chromosomes 5-like 1 (yeast)

SMC5L1

NM_015110

5.78

protein kinase, cAMP-dependent, regulatory, type I, beta

PRKAR1B

AL833563

5.77

ATP-binding cassette, sub-family A (ABC1), member 1

ABCA1

AF285167

5.36

Down-regulated at 24 h post-treatment

(From 0.13 to 0.37-fold)

interferon-inducible protein p78 (mouse)

MX1

NM_002462

0.13

interferon-induced protein 44

IFI44

NM_006417

0.16

interferon, alpha-inducible protein (clone IFI-15K)

G1P2

NM_005101

0.20

protein kinase, interferon-inducible double stranded RNA dependent

PRKR

NM_002759

0.21

2'-5'-oligoadenylate synthetase 2, 69/71 kDa

OAS2

NM_016817

0.24

BCL2-like 11 (apoptosis facilitator)

BCL2L11

NM_006538

0.28

methionyl aminopeptidase 2

METAP2

NM_006838

0.28

signal transducer and activator of transcription 1 (91 kDa)

STAT1

NM_007315

0.29

myxovirus (influenza virus) resistance 2 (mouse)

MX2

NM_002463

0.30

SP110 nuclear body protein

SP110

AF280094

0.30

sialoadhesin

SN

NM_023068

0.30

mitochondrial ribosomal protein S14

MRPS14

NM_022100

0.31

similar to S. cerevisiae SSM4

TEB4

NM_005885

0.31

XIAP associated factor-1

HSXIAPAF1

NM_017523

0.33

SP110 nuclear body protein

SP110

NM_004509

0.35

retinitis pigmentosa 2 (X-linked recessive)

RP2

NM_006915

0.36

zinc finger protein 83 (HPF1)

ZNF83

NM_018300

0.36

zinc finger antiviral protein

ZAP

NM_020119

0.36

TIA1 cytotoxic granule-associated RNA binding protein

TIA1

NM_022173

0.38

RAN binding protein 9

RANBP9

NM_005493

0.38

  1. Top 20 genes up- or down-regulated in human immature DCs in response to treatment with cichoric acid (50 g/ml) of Echinacea purpurea for 4 h (A) by fold change in expression.