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Figure 5 | BMC Genomics

Figure 5

From: A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)

Figure 5

Sequence annotation of 3' and 5' ESTs and putative unique transcripts (PUTs) against published databases. Panels A, B and C show the percentage of 3' ESTs, 5' ESTs and PUTs (derived from 3'-end ESTs), respectively, with sequence similarity to entries in nine databases including BLASTX searches against peptides from five sequenced plant genomes (i.e., Arabidopsis thaliana, Populus trichocarpa, Oryza sativa, Vitis vinifera, and Physcomitrella patens), and all peptides in the non-redundant (NR) database of GenBank; as well as BLASTN searches against 1) all gymnosperm ESTs in dbEST database of GenBank, 2) all Picea glauca ESTs in dbEST, and 3) all Pinus taeda ESTs in dbEST. Matches were identified using low (score > 50) medium (score > 200) or high (score > 1,000) BLAST stringency thresholds.

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