Table 3 Proteins identified by peptide mass fingerprinting or de novo sequencing
From: Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)
Spot n° | Peptide sequence | Protein identification | Accession # | Score | Mr (gel) | pI (gel) | Mr (cal) | pI (cal) |
|---|---|---|---|---|---|---|---|---|
PL 1 | Hypothetical protein | gi|115452789 | 138 | 38.0 | 6,7 | 39 | 6.3 | |
PL2 | Hypothetical protein | gi|115452789 | 65 | 39.0 | 6.6 | 39 | 6.3 | |
PL 3 | WAPSPADAAAGR | Chitinase | gi|407472 | 56 | 36.0 | 6.6 | 35.5 | 7.3 |
PL 7 | EHGAPQDENR | Zinc-superoxide dismutase | gi|22296339 | 26 | 15.0 | 6.4 | 14.7 | 5.9 |
PL 11 | GPIQLSFNFNYGPAGR | Chain A, Crystal Structure Of Class I Chitinase | pdb|2DKV|A | 30 | 37.0 | 6.2 | 32.6 | 5.8 |
PL 13 | AAVGHPDTLGDCPFSQR | GSH-dependent dehydroascorbate reductase 1 | gi|6939839 | 43 | 26.0 | 6.1 | 23.5 | 5.6 |
PL 20 | GTSQVEGVVTLTQDDQGPTTVNVR | Putative superoxide dismutase [Cu-Zn] | gi|42408425 | 72 | 17.0 | 5.5 | 20.5 | 5.7 |
PL 23 | L-ascorbate peroxidase 1, | P93404 | 99 | 28.0 | 5.5 | 27 | 5.4 | |
PL 24 | VATPDQAQEVHDGLR | Triosephosphate isomerase | gi|553107 | 49 | 28.0 | 5.4 | 27.5 | 6.6 |
PL 27 | EFSIPLQDSGHVVGFFGR | Salt stress-induced protein | gi|158513205 | 88 | 11.0 | 5.0 | 15.1 | 5.1 |
PL 30 | MIEDYLVAHPAEYA | Pathogenesis-related protein Bet v I | gi|9230755 | 55 | 18.0 | 4.9 | 16.6 | 4.9 |
PL 33 | ADVGVGPVSWDDTVAAYAESYAAQR | Acidic PR-1 type pathogenesis-related protein PR-1 | gi|12005673 | 182 | 17.5 | 4.2 | 17.5 | 4.5 |
PL34 | WWDTFPANVDGAR | Hypothetical protein | gi|115461070 | 87 | 29.0 | 4.7 | 27.2 | 5.0 |
PL 38 | Ascorbate peroxidase | NP_001060741 | 74 | 32.0 | 5.2 | 27 | 5.2 | |
PL 43 | MTAEIGEQVQIVGDDLLVTNPTR | Enolase | gi|780372 | 88 | 60.0 | 5.4 | 47.9 | 5.4 |
PL 46 | Enolase | Q42971 | 74 | 50.0 | 5.4 | 47.9 | 5.4 | |
PL 45 | Hypothetical protein | gi|115465323 | 98 | 60.0 | 5.2 | 58.8 | 5.9 | |
PL 51 | KADATVAGDDR | Hypothetical protein | gi|125557770 | 37 | 45.0 | 5.7 | 95.7 | 8.0 |
PL 57 | AGYAPPHWVQPGQGDR | Hypothetical protein | gi|125532459| | 73 | 25.0 | 4.2 | 24.5 | 4.6 |
PL 60 | ELFEQLLLHR | Chitinase | gi|561873 | 51 | 36.5 | 4.2 | 34.3 | 4.4 |
PL 63 | ELVADDEWLNTEFISTVQQR | Cytosolic malate dehydrogenase | gi|115482534 | 66 | 37.5 | 5.9 | 35.5 | 5.75 |
PL 40 | EFSIPLQDSGHVVGFFGR | Salt stress-induced protein | gi|158513205 | 104 | 39 | 5.3 | 15.1 | 5.1 |
Hypothetical protein | EAY73933 | 40.6 | 8.6 |