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Figure 3 | BMC Genomics

Figure 3

From: Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients

Figure 3

Scatter plot of fold change values before and after batch adjustment for simulated data sets. Genes are color coded according to their expected difference in expression level between patients and controls. Genes with the same expected level of expression in patients and controls are shown in black, while those with an expected 1.0 to 2.0 fold higher expression level in patients are in blue, and those with a 2.1 to 3.0 fold higher expression level are in red. This simulation is performed for data in which the batch effects artificially lowered the fold change values.

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BMC Genomics

ISSN: 1471-2164

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