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Table 3 Top ten organisms having the highest number of CDS specific to RefSeq (RS) database

From: Matching curated genome databases: a non trivial task

rank

organism

Total

matches

specific to

  

RS

GR

total

inexact

by location

RS

GR

RS1/GR7

Pyrococcus horikoshii OT3

1955

2076

1806

124

0

149

270

RS2

Neisseria meningitidis Z2491

2049

1991

1897

37

26

120

68

RS3/GR4

Xanthomonas oryzae pv. oryzae KACC10331

4144

4540

4030

497

2

114

510

RS4

Pyrococcus abyssi GE5

1896

1796

1783

68

0

113

3

RS5/GR6

Shewanella oneidensis MR-1

4467

4779

4364

34

1

103

415

RS6/GR8

Escherichia coli O157:H7 str. Sakai

5318

5461

5227

391

2

87

232

RS7

Deinococcus radiodurans R1

3181

1303

3099

91

1

82

4

RS8

Pyrococcus furiosus DSM 3638

2125

2065

2065

115

8

60

0

RS9

Lactococcus lactis subsp. lactis Il1403

2321

2266

2263

68

0

58

3

RS10

Thermoplasma volcanium GSS1

1499

1526

1444

351

1

55

82

  1. The organisms are sorted by their respective rank that is computed as the number of CDS that are found only in RefSeq database (Release 30). The organism names standing in the top ten list of both databases (Tables 3 and 4) are in bold.