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Table 4 Overview of hepatic transcripts exhibiting differential expression between the two genotypes (F vs L)1

From: Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver

Statistical analysis ANOVA (p < 0.01) SAM FDR ≤ 0.15 ANOVA∩SAM
Total 154 77 70
F > L 90 65 58
F < L 64 12 12
Transcripts with known biological function 127 64 58
Biological function    
   Metabolism 47 (37.0%) 30 (46.7%) 27 (46.6%)
Lipid (4.67%) 2 (3.1%) 2 (3.4%)
Precursor metabolites and energy 7 (5.5%) 6 (9.4%) 5 (8.6%)
Carbohydrate 2 (1.6%) 1 (1.6%) 1 (1.7%)
Amino acid and derivative 9 (7.1%) 6 (9.4%) 5 (8.6%)
Protein folding/synthesis/breakdown 11 (8.7%) 6 (9.4%) 5 (8.6%)
Xenobiotic and oxidant 7 (5.5%) 6 (9.4%) 6 (10.3%)
Purine and pyrimidine 3 (2.4%) 3 (4.7%) 2 (3.4%)
Iron 2 (1.6%) 1 (1.6%) 1 (1.7%)
Transcription/translation 19 (15.0%) 3 (4.7%) 2 (3.4%)
Immune response 7 (5.5%) 5 (7.8%) 5 (8.6%)
Trafficking 11 (8.7%) 5 (7.8%) 5 (8.6%)
Signal transduction 7 (5.5%) 3 (4.7%) 3 (5.2%)
Cell cycle 9 (7.1%) 5 (7.8%) 4 (6.9%)
Extracellular matrix and structural components 9 (7.1%) 3 (4.7%) 2 (3.4%)
Others 18 (14.2%) 10 (15.6%) 10 (17.2%)
  1. 1 According to ANOVA (p < 0.01), SAM analysis (FDR < 0.15) and both statistical methods