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Table 4 Genes downregulated by TSA treatment in HEPG2 cells (representative genes from total of 2975 genes at 2-fold level of expression)

From: Histone deacetylase inhibitors: A new mode for inhibition of cholesterol metabolism

Treatment type EtOH TSA   
Systematic FC Norm SE Norm SE Gene GB Acc
205890_s_at -30.7 0.975 0.05 0.032 0.02 UBD NM_006398
220437_at -12.6 0.976 0.08 0.078 0.06 LOC55908 NM_018687
223493_at -11.5 1.056 0.07 0.092 0.06 FBXO4 AF129534
226388_at -11.4 1.015 0.06 0.089 0.03 TCEA3 AI675780
202589_at -9.6 1.07 0.09 0.11 0.04 TYMS NM_001071
203979_at -8.7 1.007 0.08 0.115 0.05 CYP27A1 NM_000784
226216_at -7.2 0.887 0.11 0.123 0.06 INSR W84556
209608_s_at -6.3 1.034 0.06 0.163 0.03 ACAT2 BC000408
203924_at -6.2 0.974 0.05 0.158 0.04 GSTA2 NM_000846
205208_at -6.9 1.03 0.08 0.15 0.06 FTHFD NM_012190
219366_at -5.6 0.954 0.14 0.169 0.06 AVEN NM_020371
205820_s_at -5.3 1.02 0.06 0.19 0.04 APOC3 NM_000040
209546_s_at -5.2 0.99 0.06 0.19 0.07 APOL1 AF323540
224243_at -4.6 1.10 0.12 0.24 0.05 APOA5; RAP3 AF202889
200789_at -4.0 0.96 0.11 0.24 0.03 ECH1; HPXEL NM_001398
221750_at -3.8 0.99 0.05 0.26 0.04 HMGCS1 BG035985
202068_s_at -3.6 1.00 0.06 0.28 0.04 LDLR; FH; FHC NM_000527
225012_at -3.1 0.99 0.09 0.32 0.04 HDLBP BE378479
213577_at -3.1 1.03 0.09 0.34 0.05 SQLE AA639705
202067_s_at -2.9 0.88 0.12 0.30 0.16 LDLR AI861942
202502_at -2.8 0.97 0.05 0.35 0.03 ACADM; MCAD; NM_000016
201248_s_at -2.6 1.00 0.08 0.39 0.04 SREBF2; SREBP2 NM_004599
209218_at -2.5 1.01 0.06 0.40 0.04 SQLE AF098865
222916_s_at -2.3 0.92 0.12 0.40 0.06 HDLBP AF116718
201791_s_at -2.2 0.99 0.07 0.45 0.04 DHCR7; SLOS NM_001360
  1. FC: fold change; Norm: Normalized signal, SE: std error of normalized signal; GB Acc: GeneBank Accession number