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Figure 3 | BMC Genomics

Figure 3

From: Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platform

Figure 3

Senegalese sole microarray platform. Scatter plot of the signal intensities in the Cy3 and Cy5 channel of replica analysis of self-to-self (A) and differential gene expression (C) experiments. In both panels, the green and blue lines parallel to the black diagonal line represent the ± 3σ limits of the data from control and S. senegalensis specific oligos, respectively. The histograms of the distribution of fold changes (FC) as log2(S/C) for control and S. senegalensis specific oligos in the self-to-self (B) and differential gene expression (D) experiments are also shown. In these panels, the green and blue curves represent the ± 3σ limits on the data from control and S. senegalensis specific oligos, respectively, and the red dotted lines in the self-to-self histogram represent the cut-off chosen in the differential gene expression experiment to estimate overall FDR.

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