Figure 3From: Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platformSenegalese sole microarray platform. Scatter plot of the signal intensities in the Cy3 and Cy5 channel of replica analysis of self-to-self (A) and differential gene expression (C) experiments. In both panels, the green and blue lines parallel to the black diagonal line represent the ± 3σ limits of the data from control and S. senegalensis specific oligos, respectively. The histograms of the distribution of fold changes (FC) as log2(S/C) for control and S. senegalensis specific oligos in the self-to-self (B) and differential gene expression (D) experiments are also shown. In these panels, the green and blue curves represent the ± 3σ limits on the data from control and S. senegalensis specific oligos, respectively, and the red dotted lines in the self-to-self histogram represent the cut-off chosen in the differential gene expression experiment to estimate overall FDR.Back to article page