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Table 1 Summary of T. cacao libraries

From: Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions

Genotype Library Library description Good quality ESTs Unigenes
Jaca CERATOJ_KZ0ACI stem tissues inoculated by Ceratocystis fimbriata 1729 1270
Scavina6 CHERELS_KZ0AAC cherels from 1 week to 1 month stage of development 4252 2836
Scavina6 COPHAS_KZ0AAL pod tissue inoculated by Phytophthora palmivora 4905 2621
Scavina6 CORTEXS_KZ0AAT cortex tissue, external part 3817 2227
Scavina6 CORTINS_KZ0AAV cortex tissue internal part with lignified chanels 5096 3331
ICS1 COSSHPPI_KZ0AA SSH library from tissues inoculated/non inoculated by Phytophthora palmivora 1721 955
Scavina6 COSSHPPS_KZ0AA SSH library from tissues inoculated/non inoculated by Phytophthora palmivora 1702 1129
ICS1 COTYLEI_KZ0ABB cotyledons from germinated seeds (1 to 3 weeks) 5153 2961
B97 C-C-2 CUSHIONC_KZ0ACAC young cushions 2849 2120
Scavina6 DROUGHTLS_KZ0ACAF leaves submited to drought stresses 2766 1290
Scavina6 DROUGHTRS_KZ0ACAE roots submited to drought stresses 2685 1563
ICS1AF EMBR1WI_KZ0ABA epicotyle and hypocotyle from 1 week germinated seeds 3246 2473
ICS1AF EPIC23I_KZ0AAS epicotyle from 2–3 week germinated seeds 3005 2459
Scavina6 FLOWERS_KZ0AAD flowers at different stages of development 3511 2434
Scavina6 FLPOLSSH_KZ0ABL_M SSH library from ovaries submitted to compatible/incompatible pollinations 2398 431
ICS1AF HYPO23I_KZ0AAP hypocotyle from 2–3 week germinated seeds 5111 2955
Scavina6 LEAVES_KZ0ABE young and adult leaves at different stages of development 4698 3069
GU255V LEAVPAGU_KZ0ACQ leaves inoculated by Phytophthora palmivora 3030 2139
PNG seedlings LEPAPNGR_KZ0ACP leaves inoculated by Phytophthora palmivora 1021 862
PNG seedlings LESSHMEPNGa_KZ0ACAP SSH library from leaves inoculated by Phytophthora megakarya from susceptible-resistant PNG seedlings 356 169
PNG seedlings LESSHMEPNGb_KZ0ACV SSH library from leaves inoculated by Phytophthora megakarya from resistant – susceptible PNG seedlings 1244 749
PNG seedlings LESSHPNGRSb_KZ0ABP SSH library from leaves inoculated by Phytophthora palmivora from resistant – susceptible PNG seedlings 701 438
UF676 MIRIDUFS_KZ0ACAD young shoot tissues attacked by Sahlbergella singularis (mirids) 3011 1908
P7 MONILIOP_KZ0AB pod tissues inoculated by Moniliophthora roreri 3074 2217
UF273 MONILIOU_KZ0ABV pod tissues inoculated by Monilia roreri 3159 1871
IMC47 OVUL1_7M_KZ0ACAK ovaries from 1 to 7 days after pollinations 1565 1218
ICS1 OVULEI_KZ0AAB ovules collected 2 to 3 months after pollination 4942 3315
UPA134 PODMEUPA_KZ0ACAB pod tissues inoculated by Phytophthora megakarya 3492 2093
Scavina6 PODSSHWB1Sb_KZ0ACD SSH library from pod tissues inoculated-non inoculated by Moniliophthora perniciosa less than 60 days after inoculation 652 534
Scavina6 PODSSHWB2Sb_KZ0ACF SSH library from pod tissues inoculated-non inoculated by Moniliophthora perniciosa between 60 to 120 days after inoculation 1399 912
Scavina6 PODWB1S_KZ0ACM pod tissues inoculated by Moniliophthora perniciosa less than 60 days after inoculation 1704 1213
Scavina6 PODWB2S_KZ0ACN pod tissues inoculated by Moniliophthora perniciosa between 60 to 120 days after inoculation 1718 1217
PNG seedlings RESSHMEPNGb_KZ0AC SSH library from leaves of resistant seedlings inoculated-non inoculated by Phytophthora megakarya 1287 931
Scavina6 ROOTS_KZ0ABF roots 3567 2892
PNG seedlings RPPSSHPNGa_KZ0ACAL SSH library from leaves of resistant seedlings non inoculated- inoculated by Phytophthora palmivora 344 266
PNG seedlings RPPSSHPNGb_KZ0ACR SSH library from leaves of resistant seedlings inoculated-non inoculated by Phytophthora palmivora 1407 823
ICS1 SEED34I_KZ0AAH seeds 3 to 3,5 months after pollinations 3942 2637
ICS1 SEED45I_KZ0AAE_F seeds 4 to 5 months after pollinations 3296 1902
33–49 SEEDFERB_KZ0ACAG Cotyledons from seeds fermented between 6 H and 4 days 1664 465
ICS1 SEEDMAI_KZ0AAG seeds from mature pods 5,5 to 6 months after pollinations 3068 1844
BE240 SEEDNAB_KZ0ABH seeds 2 to 5 months after pollinations 4988 3101
ICS1 SEFERMI_A_KZ0AAR fermented seeds during 6 to 26 H 1798 844
ICS1 SEFERMI_B_KZ0AAM fermented seeds during 32 to 40 H 3931 2110
Jaca SSHCERATOJb_KZ0ACS SSH library from stems inoculated-non inoculated by Ceratocystis fimbriata 339 327
Jaca SSHCERATOJa_KZ0ACAM SSH library from stems non inoculated-inoculated by Ceratocystis fimbriata 1364 918
UF676 SSHMIRUFa_KZ0ACAN SSH library from young shoots non attacked-attacked by Sahlbergella singularis 320 296
UF676 SSHMIRUFb_KZ0ACT SSH library from young shoots attacked-non attacked by Sahlbergella singularis 1393 1051
Scavina6 STEMS_KZ0AAA complete disc of stems 1 cm diameter 4938 2880
Scavina6 STSSHWB1S_KZ0ABI_K SSH library from (and reverse sens) shoot tissues inoculated/non inoculated by Moniliophthora perniciosa less than 18 days after inoculation 1594 370
Scavina6 STSSHWB2Sb_KZ0ACB SSH library from shoot tissues inoculated-non inoculated by Moniliophthora perniciosa between 18 to 120 days after inoculation 1408 1056
33–49 TEGFERB_KZ0ACAH testa from seeds fermented between 6 H and 4 days 1649 808
ICS1 TEGPULI_KZ0AAI_K testa with pulp from mature seeds 5017 3254
Scavina6 TISCIVS_KZ0AAQ embryogenic and non embryogenic callus in vitro culture 3434 2389
ICS1 TPFERMI_A_KZ0AAN fermented testa during 6 to 40 H 4005 2164
P7 WILTP_KZ0ACL young wilted cherels 7 to 10 days after pollination 1706 1247
Scavina6 WOODS_KZ0ACAA bark and cambium part of wood 3478 2234