Table 1 Summary of T. cacao libraries
Genotype | Library | Library description | Good quality ESTs | Unigenes |
|---|---|---|---|---|
Jaca | CERATOJ_KZ0ACI | stem tissues inoculated by Ceratocystis fimbriata | 1729 | 1270 |
Scavina6 | CHERELS_KZ0AAC | cherels from 1 week to 1 month stage of development | 4252 | 2836 |
Scavina6 | COPHAS_KZ0AAL | pod tissue inoculated by Phytophthora palmivora | 4905 | 2621 |
Scavina6 | CORTEXS_KZ0AAT | cortex tissue, external part | 3817 | 2227 |
Scavina6 | CORTINS_KZ0AAV | cortex tissue internal part with lignified chanels | 5096 | 3331 |
ICS1 | COSSHPPI_KZ0AA | SSH library from tissues inoculated/non inoculated by Phytophthora palmivora | 1721 | 955 |
Scavina6 | COSSHPPS_KZ0AA | SSH library from tissues inoculated/non inoculated by Phytophthora palmivora | 1702 | 1129 |
ICS1 | COTYLEI_KZ0ABB | cotyledons from germinated seeds (1 to 3 weeks) | 5153 | 2961 |
B97 C-C-2 | CUSHIONC_KZ0ACAC | young cushions | 2849 | 2120 |
Scavina6 | DROUGHTLS_KZ0ACAF | leaves submited to drought stresses | 2766 | 1290 |
Scavina6 | DROUGHTRS_KZ0ACAE | roots submited to drought stresses | 2685 | 1563 |
ICS1AF | EMBR1WI_KZ0ABA | epicotyle and hypocotyle from 1 week germinated seeds | 3246 | 2473 |
ICS1AF | EPIC23I_KZ0AAS | epicotyle from 2–3 week germinated seeds | 3005 | 2459 |
Scavina6 | FLOWERS_KZ0AAD | flowers at different stages of development | 3511 | 2434 |
Scavina6 | FLPOLSSH_KZ0ABL_M | SSH library from ovaries submitted to compatible/incompatible pollinations | 2398 | 431 |
ICS1AF | HYPO23I_KZ0AAP | hypocotyle from 2–3 week germinated seeds | 5111 | 2955 |
Scavina6 | LEAVES_KZ0ABE | young and adult leaves at different stages of development | 4698 | 3069 |
GU255V | LEAVPAGU_KZ0ACQ | leaves inoculated by Phytophthora palmivora | 3030 | 2139 |
PNG seedlings | LEPAPNGR_KZ0ACP | leaves inoculated by Phytophthora palmivora | 1021 | 862 |
PNG seedlings | LESSHMEPNGa_KZ0ACAP | SSH library from leaves inoculated by Phytophthora megakarya from susceptible-resistant PNG seedlings | 356 | 169 |
PNG seedlings | LESSHMEPNGb_KZ0ACV | SSH library from leaves inoculated by Phytophthora megakarya from resistant – susceptible PNG seedlings | 1244 | 749 |
PNG seedlings | LESSHPNGRSb_KZ0ABP | SSH library from leaves inoculated by Phytophthora palmivora from resistant – susceptible PNG seedlings | 701 | 438 |
UF676 | MIRIDUFS_KZ0ACAD | young shoot tissues attacked by Sahlbergella singularis (mirids) | 3011 | 1908 |
P7 | MONILIOP_KZ0AB | pod tissues inoculated by Moniliophthora roreri | 3074 | 2217 |
UF273 | MONILIOU_KZ0ABV | pod tissues inoculated by Monilia roreri | 3159 | 1871 |
IMC47 | OVUL1_7M_KZ0ACAK | ovaries from 1 to 7 days after pollinations | 1565 | 1218 |
ICS1 | OVULEI_KZ0AAB | ovules collected 2 to 3 months after pollination | 4942 | 3315 |
UPA134 | PODMEUPA_KZ0ACAB | pod tissues inoculated by Phytophthora megakarya | 3492 | 2093 |
Scavina6 | PODSSHWB1Sb_KZ0ACD | SSH library from pod tissues inoculated-non inoculated by Moniliophthora perniciosa less than 60 days after inoculation | 652 | 534 |
Scavina6 | PODSSHWB2Sb_KZ0ACF | SSH library from pod tissues inoculated-non inoculated by Moniliophthora perniciosa between 60 to 120 days after inoculation | 1399 | 912 |
Scavina6 | PODWB1S_KZ0ACM | pod tissues inoculated by Moniliophthora perniciosa less than 60 days after inoculation | 1704 | 1213 |
Scavina6 | PODWB2S_KZ0ACN | pod tissues inoculated by Moniliophthora perniciosa between 60 to 120 days after inoculation | 1718 | 1217 |
PNG seedlings | RESSHMEPNGb_KZ0AC | SSH library from leaves of resistant seedlings inoculated-non inoculated by Phytophthora megakarya | 1287 | 931 |
Scavina6 | ROOTS_KZ0ABF | roots | 3567 | 2892 |
PNG seedlings | RPPSSHPNGa_KZ0ACAL | SSH library from leaves of resistant seedlings non inoculated- inoculated by Phytophthora palmivora | 344 | 266 |
PNG seedlings | RPPSSHPNGb_KZ0ACR | SSH library from leaves of resistant seedlings inoculated-non inoculated by Phytophthora palmivora | 1407 | 823 |
ICS1 | SEED34I_KZ0AAH | seeds 3 to 3,5 months after pollinations | 3942 | 2637 |
ICS1 | SEED45I_KZ0AAE_F | seeds 4 to 5 months after pollinations | 3296 | 1902 |
33–49 | SEEDFERB_KZ0ACAG | Cotyledons from seeds fermented between 6 H and 4 days | 1664 | 465 |
ICS1 | SEEDMAI_KZ0AAG | seeds from mature pods 5,5 to 6 months after pollinations | 3068 | 1844 |
BE240 | SEEDNAB_KZ0ABH | seeds 2 to 5 months after pollinations | 4988 | 3101 |
ICS1 | SEFERMI_A_KZ0AAR | fermented seeds during 6 to 26 H | 1798 | 844 |
ICS1 | SEFERMI_B_KZ0AAM | fermented seeds during 32 to 40 H | 3931 | 2110 |
Jaca | SSHCERATOJb_KZ0ACS | SSH library from stems inoculated-non inoculated by Ceratocystis fimbriata | 339 | 327 |
Jaca | SSHCERATOJa_KZ0ACAM | SSH library from stems non inoculated-inoculated by Ceratocystis fimbriata | 1364 | 918 |
UF676 | SSHMIRUFa_KZ0ACAN | SSH library from young shoots non attacked-attacked by Sahlbergella singularis | 320 | 296 |
UF676 | SSHMIRUFb_KZ0ACT | SSH library from young shoots attacked-non attacked by Sahlbergella singularis | 1393 | 1051 |
Scavina6 | STEMS_KZ0AAA | complete disc of stems 1 cm diameter | 4938 | 2880 |
Scavina6 | STSSHWB1S_KZ0ABI_K | SSH library from (and reverse sens) shoot tissues inoculated/non inoculated by Moniliophthora perniciosa less than 18 days after inoculation | 1594 | 370 |
Scavina6 | STSSHWB2Sb_KZ0ACB | SSH library from shoot tissues inoculated-non inoculated by Moniliophthora perniciosa between 18 to 120 days after inoculation | 1408 | 1056 |
33–49 | TEGFERB_KZ0ACAH | testa from seeds fermented between 6 H and 4 days | 1649 | 808 |
ICS1 | TEGPULI_KZ0AAI_K | testa with pulp from mature seeds | 5017 | 3254 |
Scavina6 | TISCIVS_KZ0AAQ | embryogenic and non embryogenic callus in vitro culture | 3434 | 2389 |
ICS1 | TPFERMI_A_KZ0AAN | fermented testa during 6 to 40 H | 4005 | 2164 |
P7 | WILTP_KZ0ACL | young wilted cherels 7 to 10 days after pollination | 1706 | 1247 |
Scavina6 | WOODS_KZ0ACAA | bark and cambium part of wood | 3478 | 2234 |