Table 4 Comparison of fractions of de novo sequenced BACs that were identified as repetitive by repeat masking and MDR analysis.
BAC | size | BLASTN1 | BLASTX2 | combined3 | MDR4 | combined5 | New6 |
|---|---|---|---|---|---|---|---|
773C20 | 91561 | 67.5 | 32.6 | 71.4 | 52.3 | 74.4 | 3 |
333E11 | 96473 | 57.0 | 23.0 | 59.5 | 47.8 | 65.9 | 6.5 |
567E19 | 98005 | 69.3 | 25.8 | 71.2 | 60.1 | 76.5 | 5.3 |
89E23 | 104909 | 26.8 | 9.7 | 30.1 | 25.5 | 38.1 | 8 |
789F12 | 97547 | 73.9 | 36.7 | 79.7 | 57.2 | 81.7 | 2.1 |
318G23 | 93787 | 67.3 | 20.1 | 70.6 | 53.1 | 77.1 | 6.5 |
104J20 | 112610 | 72.9 | 33.8 | 77.4 | 55.5 | 80.5 | 3.2 |
297P14 | 78796 | 70.9 | 24.6 | 71.0 | 57.6 | 73.6 | 2.6 |
Total | 773688 | 62.8 | 25.8 | 66.1 | 50.8 | 70.7 | 4.7 |