Table 4 Genes sorted by SVM weight, schizophrenia versus control
Expression data only | Demographic, clinical, and expression data | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
All subjects | All subjects | ||||||||||
SVM-weight | p-value | q-value | ID | GenBank | Symbol | SVM-weight | p-value | q-value | ID | GenBank | Symbol |
-6.70E-02 | 1.13E-03 | 2.46E-01 | 201137_s_at | NM_002121 | HLA-DPB1 | 1.06E-01 | 1.39E-10 | 3.11E-06 | Drug use | Â | Â |
5.99E-02 | 4.71E-02 | 1.00E+00 | 214877_at | BE794663 | CDKAL1 | 6.74E-02 | 2.88E-09 | 3.21E-05 | Alcohol use | Â | Â |
-5.62E-02 | 1.19E-01 | 1.00E+00 | 218948_at | AL136679 | QRSL1 | 5.16E-02 | 4.71E-02 | 1.00E+00 | 214877_at | BE794663 | CDKAL1 |
-5.50E-02 | 5.31E-05 | 4.79E-02 | 203851_at | NM_002178 | IGFBP6 | -5.07E-02 | 5.31E-05 | 4.30E-02 | 203851_at | NM_002178 | IGFBP6 |
-5.29E-02 | 6.22E-03 | 5.62E-01 | 204545_at | NM_000287 | PEX6 | -5.05E-02 | 6.22E-03 | 5.51E-01 | 204545_at | NM_000287 | PEX6 |
5.21E-02 | 1.17E-01 | 1.00E+00 | 202944_at | NM_000262 | NAGA | -4.84E-02 | 1.19E-01 | 1.00E+00 | 218948_at | AL136679 | QRSL1 |
-4.83E-02 | 7.19E-02 | 1.00E+00 | 201123_s_at | NM_001970 | EIF5A | 4.60E-02 | 1.17E-01 | 1.00E+00 | 202944_at | NM_000262 | NAGA |
4.79E-02 | 7.06E-02 | 1.00E+00 | 210075_at | AF151074 | 2-Mar | 4.57E-02 | 9.84E-02 | 1.00E+00 | 206785_s_at | NM_002260 | KLRC2/1 |
4.76E-02 | 7.70E-02 | 1.00E+00 | 204418_x_at | NM_000848 | GSTM2 | -4.56E-02 | 1.13E-03 | 2.35E-01 | 201137_s_at | NM_002121 | HLA-DPB1 |
4.76E-02 | 6.82E-02 | 1.00E+00 | 204550_x_at | NM_000561 | GSTM1 | -4.55E-02 | 5.69E-02 | 1.00E+00 | 218055_s_at | NM_018268 | WDR41 |
-4.64E-02 | 9.14E-02 | 1.00E+00 | 218051_s_at | NM_022908 | NT5DC2 | 4.51E-02 | 7.06E-02 | 1.00E+00 | 210075_at | AF151074 | 2-Mar |
-4.56E-02 | 6.35E-02 | 1.00E+00 | 218002_s_at | NM_004887 | CXCL14 | -4.38E-02 | 5.28E-02 | 1.00E+00 | 219592_at | NM_024596 | MCPH1 |
4.52E-02 | 9.84E-02 | 1.00E+00 | 206785_s_at | NM_002260 | KLRC2/1 | -4.31E-02 | 4.12E-02 | 1.00E+00 | 205145_s_at | NM_002477 | MYL5 |
-4.48E-02 | 9.45E-02 | 1.00E+00 | 204295_at | NM_003172 | SURF1 | -4.23E-02 | 2.78E-02 | 1.00E+00 | 206108_s_at | NM_006275 | SFRS6 |
-4.47E-02 | 2.78E-02 | 1.00E+00 | 206108_s_at | NM_006275 | SFRS6 | 4.15E-02 | 6.82E-02 | 1.00E+00 | 204550_x_at | NM_000561 | GSTM1 |
4.45E-02 | 3.91E-03 | 4.65E-01 | 212854_x_at | AB051480 | NBPF10 | 4.14E-02 | 3.91E-03 | 4.54E-01 | 212854_x_at | AB051480 | NBPF10 |
-4.37E-02 | 5.28E-02 | 1.00E+00 | 219592_at | NM_024596 | MCPH1 | -4.04E-02 | 6.35E-02 | 1.00E+00 | 218002_s_at | NM_004887 | CXCL14 |
4.34E-02 | 1.10E-01 | 1.00E+00 | 201141_at | NM_002510 | GPNMB | -3.98E-02 | 7.19E-02 | 1.00E+00 | 201123_s_at | NM_001970 | EIF5A |
4.32E-02 | 2.48E-02 | 1.00E+00 | 215823_x_at | U64661 | LOC341315 | 3.96E-02 | 7.62E-06 | 1.13E-02 | Smoking at TOD | Â | Â |
4.28E-02 | 4.33E-02 | 1.00E+00 | 221752_at | AL041728 | SSH1 | 3.93E-02 | 2.48E-02 | 9.94E-01 | 215823_x_at | U64661 | LOC341315 |
Male subjects | Male subjects | ||||||||||
-5.90E-02 | 1.59E-04 | 4.87E-02 | 201137_s_at | NM_002121 | HLA-DPB1 | 7.25E-02 | 2.42E-10 | 5.40E-06 | Drug use | Â | Â |
-5.81E-02 | 8.14E-02 | 9.87E-01 | 218948_at | AL136679 | QRSL1 | 6.57E-02 | 1.79E-09 | 1.33E-05 | Alcohol use | Â | Â |
-5.36E-02 | 2.46E-02 | 6.09E-01 | 218055_s_at | NM_018268 | WDR41 | -6.16E-02 | 3.87E-04 | 8.24E-02 | HSV 1 OD Z-score | Â | Â |
4.73E-02 | 7.55E-03 | 3.68E-01 | 215009_s_at | U92014 | SEC31A | -5.44E-02 | 2.46E-02 | 6.04E-01 | 218055_s_at | NM_018268 | WDR41 |
3.97E-02 | 7.06E-02 | 9.39E-01 | 209823_x_at | M17955 | HLA-DQB1 | -4.98E-02 | 8.14E-02 | 9.84E-01 | 218948_at | AL136679 | QRSL1 |
3.97E-02 | 3.96E-03 | 2.69E-01 | 220313_at | NM_022049 | GPR88 | 4.71E-02 | 7.55E-03 | 3.64E-01 | 215009_s_at | U92014 | SEC31A |
3.90E-02 | 2.96E-02 | 6.65E-01 | 204550_x_at | NM_000561 | GSTM1 | -4.11E-02 | 1.59E-04 | 4.68E-02 | 201137_s_at | NM_002121 | HLA-DPB1 |
3.64E-02 | 6.72E-02 | 9.24E-01 | 214877_at | BE794663 | CDKAL1 | 4.03E-02 | 4.45E-04 | 8.62E-02 | Smoking at TOD | Â | Â |
-3.63E-02 | 9.60E-05 | 3.77E-02 | 203851_at | NM_002178 | IGFBP6 | 3.97E-02 | 3.96E-03 | 2.64E-01 | 220313_at | NM_022049 | GPR88 |
-3.59E-02 | 8.41E-02 | 9.94E-01 | 221875_x_at | AW514210 | HLA-F | 3.67E-02 | 5.43E-02 | 8.51E-01 | 203554_x_at | NM_004219 | PTTG1 |
3.58E-02 | 2.52E-02 | 6.15E-01 | 201141_at | NM_002510 | GPNMB | -3.43E-02 | 8.71E-03 | 3.84E-01 | 204670_x_at | NM_002125 | HLA-DRB1 |
-3.58E-02 | 1.57E-02 | 4.94E-01 | 203031_s_at | NM_000375 | UROS | -3.35E-02 | 8.41E-02 | 9.90E-01 | 221875_x_at | AW514210 | HLA-F |
-3.56E-02 | 1.26E-02 | 4.60E-01 | 204295_at | NM_003172 | SURF1 | -3.32E-02 | 1.57E-02 | 4.90E-01 | 203031_s_at | NM_000375 | UROS |
3.56E-02 | 5.43E-02 | 8.55E-01 | 203554_x_at | NM_004219 | PTTG1 | -3.31E-02 | 9.60E-05 | 3.58E-02 | 203851_at | NM_002178 | IGFBP6 |
3.55E-02 | 4.40E-02 | 7.84E-01 | 206339_at | NM_004291 | CARTPT | 3.26E-02 | 4.40E-02 | 7.80E-01 | 206339_at | NM_004291 | CARTPT |
-3.52E-02 | 9.35E-02 | 1.00E+00 | 208729_x_at | D83043 | HLA-B | 3.25E-02 | 7.06E-02 | 9.36E-01 | 209823_x_at | M17955 | HLA-DQB1 |
-3.50E-02 | 8.71E-03 | 3.88E-01 | 204670_x_at | NM_002125 | HLA-DRB1 | -3.24E-02 | 9.35E-02 | 1.00E+00 | 208729_x_at | D83043 | HLA-B |
3.48E-02 | 6.76E-02 | 9.25E-01 | 221752_at | AL041728 | SSH1 | 3.21E-02 | 6.76E-02 | 9.21E-01 | 221752_at | AL041728 | SSH1 |
-3.46E-02 | 7.98E-02 | 9.82E-01 | 203374_s_at | AW612376 | TPP2 | 3.16E-02 | 6.18E-02 | 8.93E-01 | 204570_at | NM_001864 | COX7A1 |
3.38E-02 | 6.18E-02 | 8.97E-01 | 204570_at | NM_001864 | COX7A1 | 3.09E-02 | 2.96E-02 | 6.61E-01 | 204550_x_at | NM_000561 | GSTM1 |
Female subjects | Female subjects | ||||||||||
2.54E-02 | 1.85E-03 | 1.00E+00 | 219044_at | NM_018271 | THNSL2 | 3.49E-02 | 2.07E-02 | 1.00E+00 | Left brain | Â | Â |
-2.18E-02 | 1.71E-02 | 1.00E+00 | 208691_at | BC001188 | TFRC | 2.44E-02 | 1.85E-03 | 1.00E+00 | 219044_at | NM_018271 | THNSL2 |
-2.12E-02 | 2.36E-01 | 1.00E+00 | 202747_s_at | NM_004867 | ITM2A | -2.08E-02 | 1.71E-02 | 1.00E+00 | 208691_at | BC001188 | TFRC |
-2.04E-02 | 1.75E-01 | 1.00E+00 | 200606_at | NM_004415 | DSP | 2.07E-02 | 5.93E-04 | 1.00E+00 | Age | Â | Â |
-2.03E-02 | 2.05E-01 | 1.00E+00 | 204305_at | NM_005932 | MIPEP | -2.03E-02 | 2.36E-01 | 1.00E+00 | 202747_s_at | NM_004867 | ITM2A |
-2.01E-02 | 6.29E-02 | 1.00E+00 | 207332_s_at | NM_003234 | TFRC | -1.99E-02 | 1.75E-01 | 1.00E+00 | 200606_at | NM_004415 | DSP |
-1.92E-02 | 5.61E-02 | 1.00E+00 | 202746_at | AL021786 | ITM2A | -1.96E-02 | 2.05E-01 | 1.00E+00 | 204305_at | NM_005932 | MIPEP |
-1.86E-02 | 2.60E-02 | 1.00E+00 | 220576_at | NM_024989 | PGAP1 | -1.91E-02 | 6.29E-02 | 1.00E+00 | 207332_s_at | NM_003234 | TFRC |
1.79E-02 | 1.69E-01 | 1.00E+00 | 209619_at | K01144 | CD74 | -1.82E-02 | 5.61E-02 | 1.00E+00 | 202746_at | AL021786 | ITM2A |
1.77E-02 | 1.23E-01 | 1.00E+00 | 220954_s_at | NM_013440 | PILRB | -1.78E-02 | 2.60E-02 | 1.00E+00 | 220576_at | NM_024989 | PGAP1 |
-1.75E-02 | 1.35E-03 | 1.00E+00 | 201865_x_at | AI432196 | NR3C1 | 1.76E-02 | 1.23E-01 | 1.00E+00 | 220954_s_at | NM_013440 | PILRB |
-1.73E-02 | 9.17E-02 | 1.00E+00 | 209735_at | AF098951 | ABCG2 | 1.69E-02 | 1.69E-01 | 1.00E+00 | 209619_at | K01144 | CD74 |
-1.71E-02 | 2.97E-01 | 1.00E+00 | 209314_s_at | AK024258 | HBS1L | 1.68E-02 | 8.54E-02 | 1.00E+00 | Drug use | Â | Â |
-1.71E-02 | 5.99E-02 | 1.00E+00 | 209267_s_at | AB040120 | SLC39A8 | -1.66E-02 | 1.35E-03 | 1.00E+00 | 201865_x_at | AI432196 | NR3C1 |
-1.70E-02 | 2.88E-01 | 1.00E+00 | 218051_s_at | NM_022908 | NT5DC2 | -1.65E-02 | 9.17E-02 | 1.00E+00 | 209735_at | AF098951 | ABCG2 |
-1.66E-02 | 1.83E-01 | 1.00E+00 | 213791_at | NM_006211 | PENK | -1.62E-02 | 5.99E-02 | 1.00E+00 | 209267_s_at | AB040120 | SLC39A8 |
-1.66E-02 | 1.75E-01 | 1.00E+00 | 203697_at | U91903 | FRZB | -1.61E-02 | 1.75E-01 | 1.00E+00 | 203697_at | U91903 | FRZB |
-1.63E-02 | 9.02E-02 | 1.00E+00 | 202688_at | NM_003810 | TNFSF10 | -1.61E-02 | 2.88E-01 | 1.00E+00 | 218051_s_at | NM_022908 | NT5DC2 |
-1.62E-02 | 2.61E-01 | 1.00E+00 | 217757_at | NM_000014 | A2M | -1.55E-02 | 1.83E-01 | 1.00E+00 | 213791_at | NM_006211 | PENK |
-1.60E-02 | 6.61E-03 | 1.00E+00 | 211671_s_at | U01351 | NR3C1 | -1.55E-02 | 3.39E-01 | 1.00E+00 | 222274_at | AW975050 | FLJ31568 |