Table 1 Arrays of satellite DNA >10 kb in size
From: Analysis of the largest tandemly repeated DNA families in the human genome
Family | Chromo band | Repeat Size(s) (bp) | Coordinates (hg18) | array size (bp) | Structure |
|---|---|---|---|---|---|
GAATG/GAGTG | 1q12 | 5 | chr1:141476959–141484530 | 7,571 |  |
GAATG | 4p11 | 5 | chr4:48788006–48853362 | 65,356 | HOR |
GAATG | 4p11 | 5 | chr4:49328072–49354872 | 26,800 |  |
GAATG | 10p12.33 | 5 | chr10:18881540–18902473 | 20,933 | inversion |
GAATG | 10p11.1 | 5 | chr10:38812347–38858839 | 46,492 |  |
GAATG | 10p11.1 | 5 | chr10:39116615–39194939 | 78,302 | inversion |
GAATG | 10q11.1 | 5 | chr10:41674944–41703229 | 28,286 |  |
GAATG | 10p11.21 | 5 | chr10:42110576–42137136 | 26,560 |  |
GAATG | 20q11.21 | 5 | chr20:29267576–29296923 | 29,347 |  |
GAATG | 21p11.2 | 5 | chr21:9795590–9882589 | 86,855 |  |
GAATG | Yq11.1 | 5 | chrY:12106028–12205425 | 99,398 | HOR, 3360 bp, 5630 bp |
GAATG | Yq11.1 | 5 | chrY:12308738–12380225 | 71,488 |  |
GAATG | Yq12 | 5 | chrY:57228756–57327036 | 98,280 | HOR, 3600 bp |
CCTTG | Xp21.2 | 5 | chrX:30716537–30734673 | 18,136 |  |
CAGC | 22q11.1 | 9, 17, 26 | chr22:15419137–15429349 | 10,212 |  |
CAGC | 2p11.2 | 4, 9, 26 | chr2:87486329–87512059 | 25,730 |  |
hsatII | 2p11.2 | 26, 49 | chr2:90958833–90979427 | 20,594 | HO |
hsatII | 7q11.21 | 26, 49 | chr7:61377290–61396834 | 19,544 |  |
hsatII | 7q11.21 | 26, 49 | chr7:61417257–61440549 | 23,292 |  |
hsatII | random chr9 | 26 | chr9_random:321296–332315 | 11,019 |  |
hsatII | random chr9 | 26 | chr9_random:421232–456177 | 34,945 | inversion |
hsatII | 10p11.1 | 26, 98 | chr10:38915450–38928835 | 13,385 |  |
hsatII | 10p11.1 | 26, 49 | chr10:41703232–41717296 | 14,064 | HOR |
hsatII | 16p11.2 | 26, 49 | chr16:33783664–33806096 | 22,432 | inversion |
hsatII | 16p11.2 | 23, 26 | chr16:34038041–34057759 | 19,718 |  |
hsatII | 16q11.2 | 23, 26 | chr16:44943305–45014085 | 70,780 | HOR |
hsatII | 22q11.1 | 26 | chr22:15227855–15242475 | 14,620 |  |
Gsat | 8q11.1 | 217 | chr8:47404069–47479909 | 75,840 |  |
Gsat | 8q11.1 | 217 | chr8:47356921–47374868 | 17,947 |  |
Gsat | 8q11.1 | 217 | chr8:47119593–47154540 | 34,947 |  |
GsatX | 8p11.1 | 217 | chr8:43535538–43546546 | 11,008 |  |
GsatII | 12p11.1 | ~200 | chr12:34330336–34451537 | 121,201 | Inversions |
GsatII | 12p11.1 | 188 | chr12:34640002–34652160 | 12,158 |  |
CER | random chr17 | 48 | chr17_random:135989–174585 | 38,596 |  |
CER | 14q11.1 | 48 | chr14:18267094–18390499 | 123,405 | inversion |
CER | 18p11.21 | 48 | chr18:15225272–15236086 | 10,814 |  |
CER | 22q11.1 | 48 | chr22:14886892–15006569 | 119,677 | inversion |
BSR/beta | Yq12 | 68 | chrY:57392659–57407170 | 14,511 | HOR |
hsat4 | 1q42.13 | 35 | chr1:226783516–226809283 | 25,767 |  |
hsat4 | 16p11.1 | 35 | chr16:34775197–34825861 | 50,664 |  |
Hsat 4/alpha sat | 19q12 | 35 | chr19:32423625–32954368 | 530,743 |  |
Hsat 4/alpha sat | Xp11.1 | 35 | chrX:58228883–58296456 | 67,573 |  |
VNTR | 2p21 | 20 | chr2:43935739–43946526 | 10,787 |  |
VNTR | 2p25.3 | 28 | chr2:1505487–1520958 | 15,471 |  |
VNTR | 13q34 | 34 | chr13:111978814–112021592 | 47,778 |  |
VNTR | 15q11.2 | 36 | chr15:20373884–20384373 | 10,489 | HOR |
VNTR | 3q29 | 38 | chr3:196680314–196694112 | 13,798 | HOR |
VNTR | 19p12 | 38 | chr19:20841181–20890996 | 49,815 |  |
VNTR | 1p36.32 | 40 | chr1:2571135–2624075 | 52,940 | HOR |
VNTR | 11q23.2 | 42 | chr11:113979947–114001592 | 21,645 |  |
VNTR | 4q35.2 | 59 | chr4:188117458–188131626 | 14,168 |  |
VNTR | Xp22.33 Yp11.32 | 61 | chrX:94937–106217 | 11,280 | HOR |
VNTR | Xp22.33 Yp11.32 | 61 | chrX:16203–34821 | 18,618 | HOR, 1600 bp, 2400 bp |
VNTR | 2q37.1 | 89 | chr2:232395638–232422714 | 27,076 |  |
VNTR | 14q32.33 | 102 | chr14:104767008–104778328 | 11,320 |  |
VNTR | Yq11.222 | 125 | chrY:20,675,953–20,922,323 | 246,371 |  |
VNTR | 7q22.1 | 177 | chr7:100461970–100472619 | 10,649 | HOR |
VNTR | 14q32.33 | 495 | chr14:104478982–104490824 | 11,842 |  |
VNTR | 1q21.3 | 972 | chr1:150542280–150553107 | 10,827 |  |
VNTR | 7q11.21 | 1823 | chr7:62846888–62859169 | 12,281 |  |