Genomic characterization of putative allergen genes in peach/almond and their synteny with apple

BMC Genomics

Table 1 Basic genomic features of four putative allergen genes identified from the MB1-73 plant (F1 hybrid between 'Texas' almond and 'Earlygold' peach)

Genes¹	Total length²	ORF	Exon 1²	Intron 1²	Exon 2²	Intron 2²	Exon 3	GenBank accessions³	Bin-map⁴
Pru p/du 1.01	586	483	184	98	299			EU424239, EU424240	1:14
Pru p/du 1.02	772/762	483	184	233/223	299			EU424241, EU424242	1:14
Pru p/du 1.03	624	483	184	105/102	299			EU424243, EU424244	1:14
Pru p/du 1.04	615/622	480	184	124/131	296			EU424245, EU424246	1:14
Pru p/du 1.05	1503/1510	483	184	135	299			EU424247, EU424248	1:14
Pru p/du 1.06A	1871/2096	483	184	105/109	299			EU424251, EU424252	1:14
Pru p/du 1.06B	589	483	184	105	299			EU424249, EU424250	1:14
Pru p 1.06C	1432	483	184	109	299			EU424253	1:14
Pru p/du 2.01A	882/879	741	61	105/108	680			EU424256, EU424257	3:37
Pru p/du 2.01B	892	741	61	118	680			EU424258, EU424259	3:37
Pru p/du 2.02	1373/1271	741/729	52/58	118/180	689/671			EU424254, EU424255	7:25
Pru p/du 2.03	1296/1290	783/834	61	160	722/773			EU424260, EU424261	8:41
Pru p/du 2.04	1799/1825	993	61	110	694	678/704	238	EU424262, EU424263	1:50
Pru p/du 3.01	645	354	344	193	10			EU424264, EU424265	6:74
Pru p/du 3.02	514/513	372	362	98/97	10			EU424266, EU424267	6:74
Pru p/du 3.03	528/527	351	341	104/103	10			EU424268, EU424269	6:74
Pru p/du 4.01	1041	396	123	391	138	210	135	EU424270, EU424271	1:73
Pru p/du 4.02	754	396	123	209	138	131	135	EU424272, EU424273	7:56

¹ p and du represent peach (P. persica) and almond (P. dulcis), respectively.
² x/y indicates two different DNA lengths from 'Texas' and 'Earlygold' allele, the first is for 'Texas'.
³ Two accessions are from alleles of 'Texas' almond and 'Earlygold' peach respectively.
⁴ Bin map position is indicated by a first digit corresponding to the linkage group number followed by a colon and the distance in cM from the top of the linkage group to the last marker of this bin (i.e. 1:14 is linkage group 1 position 14 cM)

ISSN: 1471-2164