Figure 2

Screen shot of Atlantic salmon contig viewer. The top panel shows the alignment of 100/99 (first stage) clusters along with the number of individual EST reads in each. The second panel shows the 5 largest ORFs and reading frame, the BLASTX hits and reading frame, the Phred quality scores for each aligned position, and indicates whether TargetIdentifier has indicated that this clone is full-length and the predicted position of the START codon (green triangle). Selectable colored bars provide alignment links. The third panel gives specifics of the database hits and links to alignments and database entries.