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Table 4 Codon usages and amino acid frequencies per 1000 of E. sibiricum 255-15 genome and alpha-amylase proteins (Exig_1739 and Exig_2537)

From: Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach

Codon

a.a.

255-15

1739

2537

  

255-15

1739

2537

  

255-15

1739

2537

  

255-15

1739

2537

GCA

A

22.25

7.17

7.45

CAC

H

8.34

14.34

9.31

CCA

P

6.40

12.55

1.86

TCG

S

14.80

10.75

13.04

GCC

A

22.34

17.92

20.48

CAT

H

13.16

14.34

16.76

CCC

P

2.84

7.17

5.59

TCT

S

5.67

7.17

1.86

GCG

A

23.65

16.13

27.93

ATA

I

2.11

0.00

1.86

CCG

P

24.40

26.88

40.97

ACA

T

19.13

16.13

7.45

GCT

A

12.94

10.75

5.59

ATC

I

36.04

32.26

16.76

CCT

P

4.30

3.58

5.59

ACC

T

10.08

3.58

9.31

TGC

C

1.99

1.79

0.00

ATT

I

28.88

30.47

31.66

CAA

Q

24.76

14.34

20.48

ACG

T

29.17

30.47

33.52

TGT

C

3.84

0.00

1.86

AAA

K

39.13

35.84

18.62

CAG

Q

17.85

14.34

22.35

ACT

T

4.76

7.17

3.72

GAC

D

20.69

34.05

27.93

AAG

K

14.14

8.96

9.31

AGA

R

1.97

5.38

0.00

GTA

V

7.26

10.75

5.59

GAT

D

32.71

50.18

48.42

CTA

L

3.05

1.79

1.86

AGG

R

0.59

0.00

1.86

GTC

V

41.07

26.88

42.83

GAA

E

53.26

64.52

44.69

CTC

L

19.68

7.17

5.59

CGA

R

6.12

5.38

9.31

GTG

V

10.37

5.38

9.31

GAG

E

17.44

21.51

27.93

CTG

L

22.47

21.51

27.93

CGC

R

9.79

8.96

11.17

GTT

V

14.77

12.55

9.31

TTC

F

22.14

14.34

14.90

CTT

L

16.08

8.96

3.72

CGG

R

17.76

17.92

31.66

TGG

W

9.70

30.47

31.66

TTT

F

21.48

17.92

20.48

TTA

L

20.34

17.92

20.48

CGT

R

16.41

10.75

11.17

TAC

Y

13.81

25.09

26.07

GGA

G

22.99

26.88

22.35

TTG

L

22.53

17.92

22.35

AGC

S

6.96

5.38

5.59

TAT

Y

18.94

37.63

35.38

GGC

G

14.35

5.38

13.04

ATG

M

25.80

23.30

31.66

AGT

S

9.57

10.75

9.31

TAA

*

2.02

1.79

1.86

GGG

G

10.23

16.13

13.04

AAC

N

16.91

26.88

18.62

TCA

S

10.86

10.75

9.31

TAG

*

0.13

0.00

0.00

GGT

G

21.50

17.92

11.17

AAT

N

15.59

26.88

24.21

TCC

S

8.36

8.96

14.90

TGA

*

1.36

0.00

0.00

  1. The Chi-square results for the codon usage were not statistically significant for any of the two proteins compared to the genome.
  2. a.a. = amino acid