Skip to main content

Table 3 Moniliophthora perniciosa genome survey features

From: A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao

Genome survey features Values
Contigs 17,991
Contigs size (average) 1.3 Kbp
Singlets 7,065
Singlets size (average) 455 bp*
Sum of all reads 75 Mbp
Assembly size 26.7 Mbp
Estimated genome size 39 Mbp
Coverage 1.92×
Gene models  
   Ab initio gene models 13,640
   Extrinsic gene models 12,249
Total gene models 16,329
Gene density 2.77 Kbp/gene (SD ± 0.39)
  0.36 gene/Kbp (SD ± 0.05)
Average gene size 651.4 bp
GC content overall 47.7
GC content coding 49.7
GC content non coding 46.8
Intron size (mode) 52 bp
Intron size (average) 63 bp
Exon size (mode) 60 bp
Exon size (average) 166 bp
AutoFACT annotation  
   Classified (Hits) 11,950 (73%)
Assigned (Conserved expressed proteins) 7,416 (45%)
Unassigned (Conserved hypothetical proteins) 4,534 (28%)
   Unclassified (No Hits) 4,379 (27%)
  1. * – Singlet size after LUCY quality trimming (phred ≥ 16).