Table 3 Moniliophthora perniciosa genome survey features

Contigs

17,991

Contigs size (average)

1.3 Kbp

Singlets

7,065

Singlets size (average)

455 bp*

Sum of all reads

75 Mbp

Assembly size

26.7 Mbp

Estimated genome size

39 Mbp

Coverage

1.92×

Gene models

   Ab initio gene models

13,640

   Extrinsic gene models

12,249

Total gene models

16,329

Gene density

2.77 Kbp/gene (SD ± 0.39)

0.36 gene/Kbp (SD ± 0.05)

Average gene size

651.4 bp

GC content overall

47.7

GC content coding

49.7

GC content non coding

46.8

Intron size (mode)

52 bp

Intron size (average)

63 bp

Exon size (mode)

60 bp

Exon size (average)

166 bp

AutoFACT annotation

   Classified (Hits)

11,950 (73%)

Assigned (Conserved expressed proteins)

7,416 (45%)

Unassigned (Conserved hypothetical proteins)

4,534 (28%)

   Unclassified (No Hits)

4,379 (27%)