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Table 5 Top 20 CDD-PFAM domains in M. perniciosa proteins

From: A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao

CDD – IDa Domain PFAMb #Hitsc Domains %Hitsd PTN Ranke Norm Factor # Hitsg Domains Norm %Hitsh PTN Norm Ranki Norm
gnl|CDD|40168 pfam00067, Cytochrome P450 256 1.57% 1 1.3565 188.71427 1.15% 1
gnl|CDD|40170 pfam00069, Protein kinase 141 0.86% 2 1.6059 87.80184 0.54% 2
gnl|CDD|40184 pfam00083, Sugar (and other) transporters 89 0.54% 3 1.6902 52.65651 0.32% 3
gnl|CDD|40206 pfam00106, adh_short, short chain dehydrogenase 84 0.51% 4 1.7141 49.00442 0.30% 4
gnl|CDD|40235 pfam00135, COesterase, Carboxylesterase 57 0.35% 5 1.4738 38.67603 0.24% 5
gnl|CDD|40207 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase 43 0.26% 8 1.2398 34.68221 0.21% 6
gnl|CDD|40813 pfam00732, GMC_oxred_N, GMC oxidoreductase 52 0.32% 6 1.5402 33.76192 0.21% 7
gnl|CDD|40345 pfam00248, Aldo_ket_red, Aldo/keto reductase family 41 0.25% 9 1.2881 31.83088 0.19% 8
gnl|CDD|41245 pfam01185, Hydrophobin, Fungal hydrophobin 26 0.16% 21 0.8460 30.73119 0.19% 9
gnl|CDD|40253 pfam00153, Mito_carr, Mitochondrial carrier protein 38 0.23% 12 1.3890 27.35860 0.17% 10
gnl|CDD|40748 pfam00665, rve, Integrase core domain 50 0.31% 7 1.8943 26.39449 0.16% 11
gnl|CDD|40493 pfam00400, WD40, WD domain, G-beta repeat 35 0.21% 13 1.5151 23.10130 0.14% 12
gnl|CDD|40179 pfam00078, RVT, Reverse transcriptase 39 0.24% 11 1.7620 22.13448 0.14% 13
gnl|CDD|45101 pfam05199, GMC_oxred_C, GMC oxidoreductase 28 0.17% 16 1.2741 21.97654 0.13% 14
gnl|CDD|40588 pfam00501, AMP-binding, AMP-binding enzyme 40 0.24% 10 1.8537 21.57819 0.13% 15
gnl|CDD|41412 pfam01360, Monooxygenase, Monooxygenase 25 0.15% 22 1.2253 20.40382 0.12% 16
gnl|CDD|40107 pfam00005, ABC_tran, ABC transporter 33 0.20% 14 1.7198 19.18851 0.12% 17
gnl|CDD|40367 pfam00270, DEAD, DEAD/DEAH box helicase 30 0.18% 15 1.5947 18.81230 0.12% 18
gnl|CDD|40419 pfam00324, AA_permease, Amino acid permease 26 0.16% 20 1.4641 17.75798 0.11% 19
gnl|CDD|41783 pfam01753, zf-MYND, MYND finger 25 0.15% 23 1.4288 17.49737 0.11% 20
  1. a – Number of CDD entry
  2. b – Number and description of
  3. PFAM domain
  4. c – Number of gene models containing each CDD-PFAM domain
  5. d – Percentage of gene models containing each CDD-PFAM domain in relation to total number of M. perniciosa gene models (proteins).
  6. e – Non-normalized CDD-PFAM ranking
  7. f – Factor used to normalize the number of gene models containing each CDD-PFAM domain (see methods)
  8. g – Normalized number of gene models containing a CDD-PFAM domain
  9. h – Percentage of normalized number of gene models containing each CDD-PFAM domain in relation to total number of M. perniciosa gene models (proteins)
  10. i – Normalized M. perniciosa CDD-PFAM ranking