|  |  | Lineage* |  | ||
---|---|---|---|---|---|---|
Domain Architecture# | Representative sequence | No. of SPs | A | B | E | Postulated Biological Functional Associations (see text) |
Trypsin family (S1; Tryp(sin)- PF00089) | ||||||
Tryp | YP_643608.1 | 112 | + | + | + | Proteolysis |
Tryp-PDZ | NP_441326.1 | 63 | + | + | + | Signalling |
Tryp-PDZ-PDZ | NP_107958.1 | 49 | - | + | - | Signalling, Heat Shock response |
Colicin_V-Tryp | NP_338325.1 | 8 | - | + | - | Pathogenesis, Defense |
Pro_Al_prot-Tryp | NP_827728.1 | 2 | - | + | - | Proteolysis |
Tryp-Endonuclease_NS | NP_604177.1 | 1 | - | + | - | Nucleic acid metabolism |
Tryp-(FG-GAP)3 | NP_825221.1 | 1 | - | + | - | Ligand binding and processing |
Tryp-(Sel1)6 | YP_374752.1 | 1 | - | + | - | Proteolysis |
Tryp-CW_binding_1-CW_binding_1 | NP_344916.1 | 1 | - | + | - | Cell recognition, pathogenesis |
FHA-FHA-Tryp | NP_811686.1 | 1 | - | + | - | Metabolism and signalling |
Pro_Al_prot-Tryp-CBM_5_12 | NP_822175.1 | 1 | - | + | - | Carbohydrate metabolism |
(Pro_Al_prot)2-Tryp | NP_827729.1 | 1 | - | + | - | Proteolysis |
Tryp-ANF_receptor | YP_073997.1 | 1 | - | + | - | Ligand binding and processing |
Tryp-PPC-SCP | YP_434226.1 | 1 | - | + | - | Calcium chelating, signalling |
Tryp-PPC-PPC | YP_437990.1 | 1 | - | + | - | Carbohydrate metabolism, signalling |
TerD-Tryp | YP_273108.1 | 1 | - | + | - | Growth in unfavourable environment |
Subtilisin family (S8; Subt(ilisin)- PF00082) | ||||||
Subt | NP_147093.1 | 142 | + | + | + | Proteolysis |
Subt-Autotransporter | YP_260308.1 | 15 | - | + | - | Transport, Cell adhesion, Virulence |
Subtilisin_N-Subt | NP_241550.1 | 14 | + | + | + | Proteolysis |
Subt-PPC | YP_154554.1 | 9 | + | + | - | Carbohydrate metabolism, signalling |
Subtilisin_N-Subt-PA | NP_391688.1 | 4 | + | + | + | Proteolysis |
Subt-PPC-PPC | YP_341139.1 | 4 | + | + | - | Carbohydrate metabolism, signalling |
Subt-P_proprotein | NP_967370.1 | 3 | - | + | - | Proteolysis |
Subt-Big_2 | NP_969490.1 | 2 | - | + | - | Cell adhesion, pathogenesis |
Subt-DUF1034 | YP_194362.1 | 2 | - | + | - | Proteolysis |
Subt-PA-DUF1034 | NP_693854.1 | 2 | - | + | + | Proteolysis |
Subt-PKD-PKD | YP_326498.1 | 2 | + | + | + | Carbohydrate metabolism, signalling |
Subt-P_proprotein-PKD | NP_716498.1 | 2 | - | + | - | Carbohydrate metabolism, signalling |
GRP-Subt | NP_435320.1 | 1 | - | + | - | Stress response |
(Hemolys)2-Subt-P_proprotein | NP_747027.1 | 1 | - | + | - | Cell surface binding |
(Hemolys)3-Subt-P_proprot-Hemolys | NP_927988.1 | 1 | - | + | - | Cell surface binding |
PPC-Subt | YP_436813.1 | 1 | - | + | - | Carbohydrate metabolism, signalling |
Subt-BNR | NP_824495.1 | 1 | - | + | - | Proteolysis |
Subt-(CARDB)9 | NP_954260.1 | 1 | - | + | - | Cell adhesion, pathogenesis |
Subt-Cleaved_Adhesin-fn3-PKD-PKD | YP_074547.1 | 1 | - | + | - | Virulence, signalling, metabolism |
Subt-CUB | NP_967057.1 | 1 | - | + | + | Signalling |
Subt-(Dockerin_1)2 | NP_280653.1 | 1 | - | + | - | Cellulose degradation, metabolism |
Subt-DUF11 | NP_951948.1 | 1 | - | + | - | Cellular transport |
Subt-fn3 | YP_446403.1 | 1 | - | + | - | Cell surface binding |
Subt-(fn3)3-(PKD)3 | YP_565583.1 | 1 | - | + | - | Cell surface binding, signalling, metabolism |
Subt-Gram_pos_anchor | NP_241562.1 | 1 | - | + | - | Cell invasion, pathogenesis |
Subt-NosD | NP_616940.1 | 1 | + | - | - | Respiratory metabolism |
Subt-PA-DUF1034-(Big_2)2-(SLH)2 | NP_624131.1 | 1 | - | + | - | Cell adhesion, pathogenesis |
Subt-PilZ | NP_969350.1 | 1 | - | + | - | Signalling |
Subt-(P_proprotein)2 | YP_434175.1 | 1 | - | + | - | Proteolysis |
Sub_N-Subt-Cleaved_Adhesin | NP_693252.1 | 1 | - | + | - | Virulence |
Sub_N-Subt-PA-Dockerin | NP_691157.1 | 1 | - | + | - | Cellulose degradation, metabolism |
Sub_N-Subt-PA-DUF1034-Gram_pos_anchor | NP_345151.1 | 1 | - | + | - | Cell invasion, pathogenesis |
Sub_N-Subt-PA-DUF1034-(FIVAR)5-Gram_pos_anchor | NP_965819.1 | 1 | - | + | - | Cell recognition and invasion, Sugar binding |
Sub_N-Subt-PA-PPC | NP_717522.1 | 1 | - | + | - | Carbohydrate metabolism, signalling |
Sub_N-Subt-PA-PPC- P_proprotein | NP_718668.1 | 1 | - | + | - | Carbohydrate metabolism, signalling |
Thermopsin-Subt | NP_394205.1 | 1 | + | - | - | Thermostability |
(W_rich_C)2-(PPC)2-Subt | YP_382882.1 | 1 | - | + | - | Cell surface signalling |
YSIRK_signal-Subt-PA-DUF1034-(FIVAR)3- Gram_pos_anchor | NP_689039.1 | 1 | - | + | - | Cell recognition and invasion, Sugar binding |
DD-peptidase family (S12; DD-Pept(idase) -PF00144) | ||||||
DDPept | NP_811352.1 | 249 | + | + | + | Cell wall biosynthesis |
DDPept -ABC_tran | YP_434618.1 | 1 | - | + | - | Biological transport |
DDPept -DUF1343 | YP_439122.1 | 1 | - | + | - | Cell wall biosynthesis |
(Cond-AMP-PPbind)3- DDPept | NP_824819.1 | 1 | - | + | - | Metabolism of Antibiotic compounds |
Glyco_hydr_3- DDPept | NP_811352.1 | 1 | - | + | - | Carbohydrate hydrolysis |
Glyc_hyd_3_Glyc_hyd_3_C- DDPept | YP_444518.1 | 1 | - | + | - | Carbohydrate hydrolysis, metabolism |
Clp protease family (S14; Clp(_protease)- PF00574) | ||||||
Clp | NP_811352.1 | 118 | + | + | + | Proteolysis |
Clp-Nfed | NP_126341.1 | 3 | + | + | - | Proteolysis |
Lon protease family (S16; Lon_C- PF05362) | ||||||
Lon_C | NP_623361.1 | 39 | + | + | + | Proteolysis |
LON-AAA-Lon_C | NP_743601.1 | 58 | + | + | + | Signalling, metabolism |
Sigma54_activat-AAA-Lon_C | YP_183677.1 | 8 | + | + | - | Transcription regulation, metabolism |
Sigma54_activat-Lon_C | NP_127256.1 | 5 | + | - | - | Transcription regulation |
Mg_chelatase-Lon_C | NP_248420.1 | 4 | + | - | - | Bacteriochlorophyll metabolism |
Mg_chelat-Sigma54_activat-Lon_C | NP_578196.1 | 1 | + | - | - | Transcription regulation |
DnaB_C-Tryp | YP_160730.1 | 1 | - | + | - | DNA metabolism |
PDZ-Lon_C | NP_389388.1 | 1 | - | + | - | Signalling |