Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

Xue, Tongtong; Wang, Dong; Zhang, Shizhong; Ehlting, Juergen; Ni, Fei; Jakab, Stephen; Zheng, Chengchao; Zhong, Yuan

doi:10.1186/1471-2164-9-550

Table 2 The PP2C gene family of rice

From: Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

Gene	Gene name	Size(aa)	Mass(kDa)	pI	alternative splicing	Expression*
LOC_Os01g07090	OsPP2C01	332	35.43	4.69		B C D E
LOC_Os01g19130	OsPP2C02	381	41.82	4.59		B C D E
LOC_Os01g32964	OsPP2C03	335	35.90	7.91		B C D E
LOC_Os01g36080	OsPP2C04	658	73.19	6.26	4	B C D E
LOC_Os01g37130	OsPP2C05	390	41.74	5.51	2	B C D E
LOC_Os01g40094	OsPP2C06	468	48.63	4.77		B C
LOC_Os01g43100	OsPP2C07	392	41.81	8.41		B C
LOC_Os01g46760	OsPP2C08	404	43.00	5.44		B C D
LOC_Os01g62760	OsPP2C09	415	43.99	5.25		B C D E
LOC_Os02g05630	OsPP2C10	349	37.57	5.02	3	B C D E
LOC_Os02g08364	OsPP2C11	363	39.71	5.04		B C D E
LOC_Os02g13100	OsPP2C12	390	41.00	5.88		B C D E
LOC_Os02g15594	OsPP2C13	364	38.96	5.53		C D
LOC_Os02g27220	OsPP2C14	519	55.29	8.71		B C D E
LOC_Os02g35910	OsPP2C15	443	48.01	5.72		B C D
LOC_Os02g38580	OsPP2C16	522	56.26	4.66		C D
LOC_Os02g38690	OsPP2C17	764	82.81	4.81		B
LOC_Os02g38710	OsPP2C18	805	84.98	4.21		B C D
LOC_Os02g38780	OsPP2C19	653	71.41	4.65	3	B C D
LOC_Os02g38804	OsPP2C20	518	56.55	4.51		B C
LOC_Os02g39410	OsPP2C21	341	53.76	10.82	3	B C D
LOC_Os02g39480	OsPP2C22	582	63.30	4.88
LOC_Os02g42250	OsPP2C23	320	34.73	4.99
LOC_Os02g42270	OsPP2C24	316	33.45	5.28
LOC_Os02g46080	OsPP2C25	388	43.01	8.55	2	B D
LOC_Os02g46490	OsPP2C26	597	64.83	5.75		B C D E
LOC_Os02g55560	OsPP2C27	185	39.27	4.9	2	B C D E
LOC_Os03g04430	OsPP2C28	400	44.29	8.77	3	B C D
LOC_Os03g10950	OsPP2C29	393	42.51	8.22		B C D
LOC_Os03g16170	OsPP2C30	405	43.28	5.71		B C D E
LOC_Os03g16760	OsPP2C31	632	68.74	6.39		B C D
LOC_Os03g18150	OsPP2C32	392	41.31	6.37		B C E
LOC_Os03g18970	OsPP2C33	433	45.83	6.69		B C D
LOC_Os03g55320	OsPP2C34	381	41.75	9.79	3	B C D E
LOC_Os03g60650	OsPP2C35	640	69.18	5.31		B C D E
LOC_Os03g61690	OsPP2C36	387	42.02	7.25	2	B C D
LOC_Os04g08560	OsPP2C37	435	44.81	7.24		B C
LOC_Os04g25570	OsPP2C38	461	49.69	6.78		B C D
LOC_Os04g33080	OsPP2C39	521	57.32	4.57		B C E
LOC_Os04g37660	OsPP2C40	462	48.71	6.32	2	B C
LOC_Os04g37904	OsPP2C41	285	31.01	6.25	3	B C E
LOC_Os04g42260	OsPP2C42	353	38.17	6.83		B C
LOC_Os04g49490	OsPP2C43	389	43.19	6.51		B C
LOC_Os04g52000	OsPP2C44	322	34.77	8.66		B C D E
LOC_Os04g56450	OsPP2C45	283	30.58	4.75	2	B C D E
LOC_Os05g02110	OsPP2C46	594	63.48	5.28		B
LOC_Os05g04360	OsPP2C47	390	42.38	4.55		B C D E
LOC_Os05g29030	OsPP2C48	354	38.10	7.38	2	B C D
LOC_Os05g38290	OsPP2C49	417	43.78	8.33		B C E
LOC_Os05g46040	OsPP2C50	388	41.55	5.97	2	B C
LOC_Os05g49730	OsPP2C51	382	40.35	7.83		B C D
LOC_Os05g50970	OsPP2C52	492	52.92	4.49		B C D
LOC_Os05g51510	OsPP2C53	446	46.68	4.67	2	B C D E
LOC_Os06g08140	OsPP2C54	361	39.35	4.98		B C D
LOC_Os06g33530	OsPP2C55	354	38.29	10.56		B E
LOC_Os06g33549	OsPP2C56	353	37.81	8.48		B C E
LOC_Os06g39600	OsPP2C57	368	39.44	5.17	2	B C D
LOC_Os06g44210	OsPP2C58	369	40.59	4.71	2	B C D E
LOC_Os06g48300	OsPP2C59	328	34.94	4.39		B C D E
LOC_Os06g50380	OsPP2C60	393	43.58	8.65	2	B C D E
LOC_Os07g02330	OsPP2C61	378	40.62	8.24		B C D E
LOC_Os07g32380	OsPP2C62	291	31.74	6.97		B C
LOC_Os07g33230	OsPP2C63	224	24.68	7.05		B
LOC_Os07g37890	OsPP2C64	428	46.30	5.55		B C D E
LOC_Os07g45170	OsPP2C65	446	47.22	5.62		B C
LOC_Os08g39100	OsPP2C66	532	57.67	5		B C D
LOC_Os09g14540	OsPP2C67	368	39.39	6.83		B C D
LOC_Os09g15670	OsPP2C68	359	37.70	6.5		B C D
LOC_Os09g28560	OsPP2C69	423	45.81	5.34		C
LOC_Os09g38550	OsPP2C70	352	38.47	5.08	4	B C D E
LOC_Os10g22460	OsPP2C71	466	48.49	4.08		B C D
LOC_Os10g39780	OsPP2C72	335	36.76	6.84	4	B C D E
LOC_Os11g01790	OsPP2C73	421	46.26	5.85		B C D
LOC_Os11g13820	OsPP2C74	398	41.35	6.64		C
LOC_Os11g22404	OsPP2C75	433	47.11	6.12		B C D
LOC_Os11g37540	OsPP2C76	1116	127.19	6.98		B C E
LOC_Os12g09640	OsPP2C77	422	435.57	7.32		B C
LOC_Os12g39120	OsPP2C78	393	43.53	8.61		B C D

*Evidence for gene expression inferred from (B) massively parallel signature sequencing (MPSS), (C) EST clones, (D) full-length cDNA clones and (E) serial analysis of gene expression (SAGE).

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