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Table 8 Comparison between SuperSAGE expression profiles and 16 K-microarray-generated expression data

From: SuperSAGE: the drought stress-responsive transcriptome of chickpea roots

Section Annotation Uniprot ACC
A 9/13 hydroperoxide lyase Q7X9B3
  Adenosine 5'-phosphosulfate reductase Q8W1A1
  Alkaline alpha galactosidase I (Fragment) Q84NI7
  At1g68060/T23K23 Q8L7S4
  AT3g29575/MWE13 Q94F39
  AT4g18030/T6K21 Q94EJ6
  AT5g03040/F15A17 Q93ZH7
  Auxin-induced beta-glucosidase Q7XJH8
  Calcineurin B-like-interacting protein kinase Q84XC0
  ERD3 protein Q94II3
  Expansin-like protein (Fragment) Q7XHJ2
  Gb| AAD25781.1 Q9FK34
  General negative transcription regulator-like Q9LSS9
  Glucan endo-1,3-beta-d-glucosidase precursor Q9ZP12
  Glucosyltransferase-13 (Fragment) Q8S996
  Leucine-rich repeat resistance protein-like protein Q93X72
  Nine-cis-epoxycarotenoid dioxygenase1 Q8LP17
  Photosystem I psaH protein Q7XA96
  Plasma membrane intrinsic polypeptide Q9SMK5
  PS60 protein precursor Q40473
  Putative extracellular dermal glycoprotein Q9FSZ9
  Putative wound-induced protein Q9SBR5
  Pyruvate decarboxylase 1 (EC 4.1.1.1) Q84V95
  Ubiquitin Q39257
B Basic blue copper protein Q9ZRV5
  BZIP transcription factor ATB2 Q8L5W2
  Cationic peroxidase Q9FT05
  CjMDR1 Q94IH6
  Extensin O65760
  Putative ripening related protein Q8L6V6
  Putative senescence-associated protein Q9AVI1
  S-adenosyl-L-methionine Q84KK6
C Basic blue copper protein Q9ZRV5
  BZIP transcription factor ATB2 Q8L5W2
  Cationic peroxidase Q9FT05
  Extensin O65760
  Hydroxycinnamoyl transferase Q8GSM7
  Putative ripening related protein Q8L6V6
  Putative senescence-associated protein Q9AVI1
  Putative UDP-glycose Q9M3H8
  Root-specific metal transporter Q84LR1
  Selenium binding protein Q93WS1
D 1-deoxy-D-xylulose 5-phosphate synthase 1 prec. Q8L693
  Asparagine synthetase O24483
  Aspartic proteinase Q9SXU0
  Aspartic proteinase 2 Q948P0
  AT5g17550/K10A8 Q94EI3
  AT5g64840/MXK3 Q93ZN6
  ATP citrate lyase b-subunit Q93YH3
  Auxin-induced beta-glucosidase Q7XJH8
  CjMDR1 Q94IH6
  Ferritin Q9ZP90
  Gb| AAD25584.1 Q9FJL6
  Glutathione S-transferase GST 11 (EC 2.5.1.18) Q9FQE7
  Leucine-rich repeat resistance protein-like protein Q93X72
  LHY protein Q8L5P7
  Myo-inositol-1-phosphate synthase Q94C02
  Phosphomevalonate kinase Q944G1
  Plasma membrane intrinsic polypeptide Q9SMK5
  Putative extracellular dermal glycoprotein Q9FSZ9
  RING/C3HC4/PHD zinc finger-like protein Q84KA9
  1-aminocyclopropane-1-carboxylic acid oxidase Q84L58
  3-hydroxy-3-methylglutaryl coenzyme A Q8W2E3
  68 kDa protein Q9M3Y6
  Arabidopsis thaliana TAC clone:K16E1 Q9FH68
  AT3g48690/T8P19 Q8VZG3
  Avr9 elicitor response protein Q9ZS49
  Basic blue copper protein Q9ZRV5
  BZIP transcription factor ATB2 Q8L5W2
  Cationic peroxidase Q9FT05
  Dehydration responsive element binding protein Q7Y0Y9
  Dehydrin-like protein Q945Q7
  Drought responsive element binding protein Q5RM57
  Expansin Q8GZD3
  Extensin O65760
  F14J16.29 Q9LG09
  F20N2.11 Q9LFZ9
  F3F9.21 Q9M9E5
  HDA2 (Fragment) Q8LRK7
  Hydroxycinnamoyl transferase Q8GSM7
  Hypothetical protein Q9LEN5
  Importin beta Q9FJD4
  Ntdin Q9MBD6
  Polygalacturonase-like protein Q9LRY8
  Polygalacturonase-like protein; At5g41870 Q9FJ27
  Protein phpsphatase 2C (PP2C) (EC 3.1.3.16) Q9M3V1
  Putative imbibition protein Q9M442
  Putative Pi starvation-induced protein O65757
  Putative quinone oxidoreductase Q8L5Q7
  Putative ripening related protein Q8L6V6
  Putative senescence-associated protein Q9AVI1
  Putative sucrose-H+ symporter Q84N01
  Putative UDP-glycose Q9M3H8
  Root-specific metal transporter Q84LR1
  S-adenosyl-L-methionine Q84KK6
  Selenium binding protein Q93WS1
  1. Comparison between SuperSAGE expression profiles and 16K-microarray-generated expression data (Buitink and co-authors [10]). Four main categories from the cluster analysis in Figure 9 are detailed below.
  2. Section A: Down-regulated tags and down-regulated transcripts on the microarray.
  3. Section B: Contrasting SuperSAGE and microarray expression profiles (down- versus up-regulated)
  4. Section C: Contrasting SuperSAGE and microarray expression profiles (up-regulated vs. constitutive)
  5. Section D: Up-regulated or constitutive tags and 16K-microarray transcripts, respectively