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Table 2 71 GIs identified among five strains of B. pseudomallei.

From: Genomic islands from five strains of Burkholderia pseudomallei

Strains

K96243*

1710b

1106a

MSHR668

MSHR305

Strains with GIs

Unique GIs

% Unique

Chromosome 1

GI1

GI1

GI1

GI1.1

-

4

2

50%

 

-

-

-

GI1a

-

1

1

100%

 

GI2

-

-

-

-

1

1

100%

 

GI3

GI3.1

-

-

-

2

2

100%

 

-

-

-

-

GI3a

1

1

100%

 

GI4

GI4.1

GI4.2

GI4.3

GI4.4

5

5

100%

 

GI5

-

-

-

-

1

1

100%

 

-

GI5a

GI5a.1

GI5a.1

GI5a.2

4

3

75%

 

GI6

-

-

-

GI6

2

1

50%

 

-

-

GI6a

-

-

1

1

100%

 

-

GI6b

-

-

-

1

1

100%

 

GI7

GI7.1

GI7.2

GI7.3

GI7.4

5

5

100%

 

GI8

GI8.1

GI8.2

-

GI8.3

4

4

100%

 

-

-

-

GI8a

-

1

1

100%

 

-

GI8b

GI8b

-

-

2

1

50%

 

-

-

-

-

GI8c

1

1

100%

 

-

-

-

-

GI8d

1

1

100%

 

GI9

-

-

-

-

1

1

100%

 

-

-

-

GI9a

-

1

1

100%

 

-

-

-

GI9b

-

1

1

100%

 

-

-

-

GI9c

GI9c.1

2

2

100%

 

GI10

GI10.1

GI10.2

GI10

GI10.3

5

4

80%

 

GI11

-

GI11.1

-

GI11.2

3

3

100%

 

GI12

GI12.1

GI12.2

GI12.3

GI12.4

5

5

100%

 

-

-

GI12a

-

-

1

1

100%

Chromosome 2

GI13

GI13.1

GI13.2

GI13.3

GI13.4

5

5

100%

 

GI14

GI14

GI14

GI14.1

GI14

5

2

40%

 

-

-

-

-

GI14a

1

1

100%

 

GI15

-

-

-

GI15.1

2

2

100%

 

-

GI15a

-

-

-

1

1

100%

 

-

-

-

-

GI15b

1

1

100%

 

-

-

-

GI15c

-

1

1

100%

 

-

-

-

-

GI15d

1

1

100%

 

-

GI15e

GI15e

GI15e

GI15e

4

1

25%

 

GI16

GI16.1

GI16.1

-

GI16.2

4

3

75%

 

-

-

-

GI16a

-

1

1

100%

 

GI16b

GI16b.1

GI16b.1

GI16b

GI16b.1

5

2

40%

Total GIs

17

16

16

17

21

   

Unique GIs

12

10

9

13

17

   

% Unique

71%

63%

56%

76%

81%

   
  1. Note: Rows represent 37 different genomic locations where GIs were found in at least one strain. These positions are listed according to the relative location in strain K96243. Different GI names indicate different gene content [see Additional file 3]. GIs shared among strains at the same relative genomic location are indicated (bold). * GIs1-16 in strain K96243 were previously described [11], whereas GI16b is reported here for the first time.
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BMC Genomics

ISSN: 1471-2164

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