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Table 2 Number of octomer repeats associated with CR1 elements from subfamily I

From: Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference

Number of repeats1

Number of CR1s2

Number with perfect repeats3

Number with perfect repeats and intact ORF2 and 3' UTR4

1

24

19

11

2

61

33

14

3

16

7

3

4

1

1

1

  1. 1Refers to the number of recognizable octomer repeats (TTCTGTGA) associated with a CR1 excludes those containing more than two base substitutions, indels or truncations.
  2. 2Represents the number of CR1 elements that contain 1–4 octomer repeats.
  3. 3Represents the number of CR1 elements that contain perfect repeats (TTCTGTGA).
  4. 4Represents the number of CR1 elements that contain perfect repeats and intact ORF2s and 3' UTRs.
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BMC Genomics

ISSN: 1471-2164

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