From: Genome-wide transcriptional response of an avian pathogenic Escherichia coli (APEC) pst mutant
Functional class and gene namea,b,c,d,e,f,g | Operonc,d,e,f,h | Known or predicted function | Fold change |
---|---|---|---|
Transport and binding protein | |||
artI | art P IQM d | Arginine-binding periplasmic protein 1 | 1.74 |
artJ c | Â | Arginine-binding periplasmic protein 2 | 1.78 |
feoB | feo A c B | Ferrous iron transport protein | 2.19 |
glnH c | glnHPQ d | Glutamine ABC transporter periplasmic-binding protein | 1.57 |
mdtE e | mdtE F | Multidrug resistance efflux transporter | 1.64 |
oppA c | oppABC DF | Periplasmic oligopeptide-binding protein | 2.66 |
phnC b,c | phnCDEFGHIJKLMNOP | Phosphonates transport ATP-binding protein | 145.81 |
phoE b,c | Â | Outer membrane phosphoporin protein | 85.15 |
potE | speF-potE | Putrescine-ornithine antiporter | 2.56 |
pstS b,c | pstS CA B - phoU | High-affinity phosphate-specific transport system | 60.97 |
srlA c | srlAEBD - gutM - srlR c - gutQ | PTS system, glucitol/sorbitol-specific IIC2 component | 4.61 |
ugpB b,c,d | ugpBAEC d Q | sn-glycerol 3-phosphate transport system periplasmic binding protein | 40.00 |
yeaN | yeaN O | Putative amino acid/amine transport protein | 2.91 |
yhiD d,e | Â | Predicted Mg(2+) transport ATPase inner membrane protein | 2.35 |
Energy metabolism | |||
dhaK | dhaKL M | Dihydroxyacetone kinase | 1.85 |
grxB | Â | Glutaredoxin 2 | 1.85 |
hcp | hcp - hcr | Hydroxylamine reductase | 1.63 |
melA | melAB | Alpha-galactosidase | 3.24 |
nagB | nagB ACD | Glucosamine-6-phosphate deaminase | 1.83 |
napH | nap FDAG HB C-ccmABCDEFGH | Quinol dehydrogenase membrane component | 2.56 |
nrfA | nrfABCD EFG | Cytochrome c552/nitrite reductase, formate-dependent | 3.74 |
talA c,d | Â | Transaldolase | 1.57 |
treA c,d | Â | Periplasmic trehalase | 1.67 |
ulaB | ula A B c C DE F | L-ascorbate-specific enzyme IIB component of PTS | 2.46 |
ulaG | Â | Predicted L-ascorbate 6-phosphate lactonase | 2.04 |
Protein fate | |||
hdeA d,e | hdeAB d,e | Acid-resistance protein | 2.10 |
iraP c,d |  | Anti-adaptor protein for σS stabilization | 4.42 |
Cellular processes | |||
amn b,c | Â | AMP nucleosidase | 6.08 |
katE d | Â | Catalase HPII/hydroperoxidase HPII(III) | 1.95 |
sodC f | Â | Superoxide dismutase (Cu-Zn) | 1.75 |
ycgV | Â | Predicted adhesin | 4.01 |
Transcription | |||
chaB | chaB C | Cation transport regulator | 1.75 |
gadE e | Â | DNA-binding transcriptional activator | 3.60 |
gadX d,e | Â | DNA-binding transcriptional dual regulator | 2.15 |
gadW d,e | Â | DNA-binding transcriptional activator | 6.84 |
iciA b,c | Â | Chromosome replication initiation inhibitor protein | 2.00 |
phoB b,c | phoBR | DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) | 36.23 |
yhiF e | Â | Predicted transcriptional regulator | 1.66 |
Central intermediary metabolism | |||
gadA c,d,e | Â | Glutamate decarboxylase alpha | 2.57 |
gadB c,d,e | gadBC | Glutamate decarboxylase beta | 4.91 |
phoA b,c | phoA - psiF | Alkaline phosphatase | 112.67 |
sufA e | sufABCDSE | Iron-sulfur cluster assembly scaffold protein | 1.91 |
Cell enveloppe | |||
yibD b | Â | Putative glycosyl transferase | 45.95 |
Fatty acid and phospholipid metabolism | |||
cdh | Â | CDP-diacylglycerol phosphotidylhydrolase | 4.28 |
hdhA d | Â | 7-alpha-hydroxysteroid dehydrogenase | 1.52 |
Unknown function | |||
c0754 g | Â | Hypothetical protein | 2.12 |
c0778 g | c0778-speF-potE | Hypothetical protein | 2.43 |
c0902 | Â | Hypothetical protein | 1.65 |
c1013 | Â | Hypothetical protein | 1.83 |
c1153 c,g | Â | Hypothetical protein | 2.35 |
c1435 g | Â | Hypothetical protein | 2.26 |
c2837 g | Â | Hypothetical protein | 1.53 |
c4182 | Â | Hypothetical protein | 1.76 |
phoH b,c | Â | Conserved protein with nucleoside triphosphate hydrolase domain | 5.95 |
psiE b,c | Â | Phosphate-starvation-inducible protein | 1.84 |
ytfK b | Â | Hypothetical protein | 6.65 |
z0950 g | Â | Unknown | 1.58 |
Biosynthesis of cofactors, prosthetic groups and carriers | |||
iucD g | iucABC D -iutA | Lysine/ornithine N-monooxygenase | 1.76 |
Regulatory function | |||
dps d,f | Â | DNA protection during starvation conditions | 1.87 |
isrA | Â | Small antisense RNA | 1.64 |
sgrS | Â | Small antisense RNA | 1.98 |
rybA | Â | Small antisense RNA | 1.59 |
rygC | Â | Small antisense RNA | 1.50 |
yddV | yddV - dos | Predicted diguanylate cyclase | 1.80 |