Table 2 Expressed FLcDNAs that identify possible gaps in the genome sequence assembly
Clone ID | GenBank ID | FLcDNA length (bp) | FL status/ORF size (aa) | NR BLASTP best match | dbEST BLASTN best match | ||
|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | GenBank accession, gene name, species | BLAST Score | GenBank accession, species | BLAST Score |
WS0138_J20 | EF148816 | 1444 | FL/340 | AAB39877.1, NMT1 protein, Uromyces fabae | 1572 | DN493922.1, Populus tremula | 770 |
WS01313_D10 | EF148323 | 1439 | FL/363 | At3g20790, oxidoreductase, Arabidopsis thaliana | 1233 | DN501083, P. trichocarpa | 1318 |
WS0127_P01 | EF148143 | 1237 | FL/299 | AAD01907, methenyltetrahydrofolate dehydrogenase, Pisum sativum | 1213 | CV131075.1, P. deltoides | 1511 |
WS01231_K20 | EF147482 | 1207 | FL/256 | At5g20060, phospholipase/carboxylesterase family, A. thaliana | 1026 | DV464443.2, P. fremontii × P. angustifolia | 1479 |
WS0135_G15 | EF148633 | 992 | n.a. | No matches | n.a. | BU891205, P. tremula | 240 |
WS01312_F21 | EF148269 | 946 | n.a. | No matches | n.a. | BI122644.1, P. tremula × P. tremuloides | 729 |
WS01315_I11 | EF148467 | 836 | n.a. | No matches | n.a. | BU824948.1, P. tremula × P. tremuloides | 339 |
WS01312_H02 | EF148274 | 835 | n.a. | No matches | n.a. | BU791223.1, P. trichocarpa × P. deltoides | 779 |
WS01212_B01 | EF146690 | 821 | FL/88 | BAB68268.1, drought-inducible protein, Saccharum officinarum | 147 | BU879805.1, P. trichocarpa | 595 |
WS0122_E05 | EF147284 | 739 | FL/131 | CAB80775.1, proline-rich protein, A. thaliana | 340 | BU866461.1, P. tremula | 890 |
WS0122_O15 | EF147357 | 736 | FL/162 | At4g10300, hypothetical protein, A. thaliana | 444 | CX181869.1, Populus × canadensis | 1215 |
WS0113_C11 | EF145750 | 722 | FL/136 | At3g12260, complex 1/LVR family protein, A. thaliana | 426 | BU879375.1, P. trichocarpa | 1223 |
WS0125_P18 | EF147919 | 596 | 3' trunc./70 | AAF71823.1, pumilio domain protein, P. tremula × P. tremuloides | 167 | CX187487.1, Populus × canadensis | 722 |
WS01123_K15 | EF145357 | 483 | n.a. | No matches | n.a. | CK319617.1, P. deltoides | 268 |
WS01231_G04 | EF147458 | 416 | 5' trunc./62 | At3g18790, hypothetical protein, A. thaliana | 200 | CX184264.1, Populus × canadensis | 543 |
WS0124_L22 | EF147751 | 360 | n.a. | No matches | n.a. | BI128250.1, P. tremula × P. tremuloides | 494 |
WS0126_O09 | EF148027 | 342 | n.a. | No matches | n.a. | CF228572.1, P. tremula × P. alba | 410 |
WS01118_P04 | EF144846 | 300 | n.a. | No matches | n.a. | CX184524.1, Populus × canadensis | 242 |
WS0136_N09 | EF148717 | 278 | n.a. | No matches | n.a. | CX179364.1, Populus × canadensis | 458 |
WS0138_I14 | EF148811 | 231 | n.a. | No matches | n.a. | CX170421.1, P. deltoides | 228 |