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Table 3 FLcDNAs corresponding to transcripts most strongly induced by forest tent caterpillar (FTC) feeding [fold-change (FC) ≥ 2.0, P value < 0.05, Q value < 0.05]

From: Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

    

NR BLASTP best match

FTC feeding @ 24 h

15.5 K Array ID

Matching FLcDNA ID

GenBank ID

FL status/ORF size (aa)

GenBank accession, gene name, species

BLAST score

FC

P

Q

WS0151_M13

WS0131_K04a

EF148503

FL/202

BAB85998.1, Kunitz trypsin inhibitor, Populus nigra

396

60.4

<0.001

<0.001

WS0132_F23

WS0133_O14a

EF148554

FL/202

BAB85997.1, Kunitz trypsin inhibitor, P. nigra

380

50.2

<0.001

<0.001

WS0134_B13

WS0134_B13

EF148557

FL/212

AAQ84217.1, Kunitz trypsin inhibitor, Populus trichocarpa × deltoides

387

46.2

<0.001

<0.001

WS0133_N23

WS0133_N23

EF148553

FL/197

CAJ21341.1, Kunitz trypsin inhibitor, P. nigra

383

38.8

<0.001

<0.001

WS0124_G12

WS0124_G12

EF147703

FL/159

AAQ08196.1, translation initiation factor 5A, Hevea brasiliensis

316

29.0

<0.001

<0.001

WS01223_D01

WS01223_D01

EF146918

FL/359

At1g74320, choline kinase, Arabidopsis thaliana

537

28.4

<0.001

<0.001

WS0134_E16

WS0134_E16

EF148571

5' trunc./124

AAA16342.1, vegetative storage protein, P. trichocarpa × deltoides

239

27.4

<0.001

<0.001

WS01120_O24

WS01120_O24

EF145143

3' trunc./56

At4g07960, putative glucosyltransferase, A. thaliana

72

26.4

<0.001

<0.001

WS01211_H19

WS01211_H19

EF146657

FL/337

CAN72815, hypothetical protein, Vitis vinifera

253

26.0

<0.001

<0.001

WS0121_J16

WS0122_N13

EF147347

FL/339

AAK01124.1, vegetative storage protein, P. trichocarpa × deltoides

509

25.4

<0.001

<0.001

WS0141_P05

WS0132_K10a

EF148516

FL/202

AAQ84216.1, Kunitz trypsin inhibitor, Populus trichocarpa × deltoides

386

22.7

<0.001

<0.001

WS01118_D16

WS01118_D16

EF144781

n.a.

No protein matches

n.a.

16.8

<0.001

<0.001

WS0168_C17

WS01119_J20

EF144899

FL/285

AAY43790.1, hypothetical protein, Gossypium hirsutum

77

16.0

<0.001

<0.001

WS01119_E18

WS01119_E18

EF144877

3' trunc./67

At5g61770, brix domain-containing protein, A. thaliana

85

15.7

<0.001

<0.001

WS0133_B24

WS0133_K20a

EF148543

FL/202

CAH59150.1, Kunitz trypsin inhibitor, Populus tremula

351

15.5

<0.001

<0.001

WS0155_D02

WS0138_H02a

EF148810

FL/251

BAB21610.2, mangrin/allene oxide cyclase, Bruguiera sexangula

336

14.4

<0.001

<0.001

WS0152_M24

WS0128_J15

EF148194

FL/91

At5g24165, hypothetical protein, A. thaliana

72

13.7

<0.001

<0.001

WS01118_N14

WS01118_N14

EF144837

frameshift/47

At4g27960, ubiquitin conjugating enzyme 9, A. thaliana

96

13.2

<0.001

<0.001

WS01212_M19

WS0128_D22

EF148166

FL/509

ABA01477.1, cytochrome P450, Gossypium hirsutum

726

12.3

<0.001

0.002

WS01211_N06

WS0118_O23a

EF146529

FL/225

ABS12347.1, dehydrin, P. nigra

167

11.8

<0.001

<0.001

WS0132_A15

WS01313_N19

EF148368

FL/396

At4g18550, lipase class 3 family protein, A. thaliana

385

11.6

<0.001

0.001

WS01212_B20

WS0128_L03

EF148205

FL/318

CAA73220.1, isoflavone reductase, Citrus × paradise

469

10.4

<0.001

<0.001

WS0122_C03

WS0122_C03

EF147271

FL/133

CAN82925.1, hypothetical protein, V. vinifera

114

9.2

<0.001

0.001

WS0113_H20

WS0113_H20

EF145803

n.a.

No protein matches

n.a.

8.8

<0.001

<0.001

WS0134_J14

WS0134_J14a

EF148597

FL/202

AAQ84216.1, Kunitz trypsin inhibitor, P. trichocarpa × deltoides

380

7.9

<0.001

<0.001

WS01120_N21

WS01120_N21

EF145138

n.a.

No protein matches

n.a.

6.9

<0.001

<0.001

WS0114_H12

WS0114_H12

EF145947

FL/252

At4g01470, major intrinsic family protein, A. thaliana

364

6.3

<0.001

<0.001

WS0126_E15

WS0126_E15

EF147963

FL/325

At1g30910, molybdenum cofactor sulfurase family protein, A. thaliana

444

6.2

<0.001

<0.001

WS0168_F14

WS01123_O20

EF145380

FL/217

At3g18030, phosphopantothenoyl cysteine decarboxylase, A. thaliana

350

6.2

<0.001

<0.001

PX0019_C05

PX0019_C05

EF144379

FL/214

AAF64453.1, heat-shock protein 90, Euphorbia esula

330

5.7

<0.001

<0.001

WS0205_K16

WS01214_G11

EF146815

FL/387

CAN71454.1, hypothetical protein, V. vinifera

682

5.6

<0.001

<0.001

WS0152_N17

WS0114_F10a

EF145928

FL/70

BAA03527.1, ATP synthase epsilon subunit, Ipomoea batatas

120

5.6

<0.001

0.001

WS01118_A11

WS0113_M04

EF145848

FL/97

At1g77710, ubiquitin-fold modifier precursor, A. thaliana

150

5.5

<0.001

<0.001

WS0132_L23

WS0132_L23

EF148518

FL/372

AAP87281.1, beta-1,3-glucanase, Hevea brasiliensis

540

5.4

<0.001

0.002

WS0124_C22

WS0124_C22

EF147658

5' trunc./142

CAA42660.1, luminal binding protein, Nicotiana tabacum

213

5.4

<0.001

<0.001

WS01116_C06

WS01123_N20

EF145376

FL/250

At4g38210, expansin A20 precursor, A. thaliana

351

5.2

<0.001

<0.001

WS0114_D04

WS01211_M02a

EF146676

FL/414

AAB71419.1, calreticulin, Ricinus communis

556

5.0

<0.001

<0.001

WS01117_O15

WS01117_O15

EF144759

FL/230

At4g11150, Vacuolar ATP synthase subunit E1, A. thaliana

295

4.7

<0.001

<0.001

WS0133_J24

WS0133_J24

EF148541

FL/177

At1g01250, AP2 transcription factor, A. thaliana

303

4.6

0.001

0.004

WS0148_P02

WS0127_F13

EF148073

5' trunc./283

At1g64660, methionine gamma-lyase, A. thaliana

424

4.5

<0.001

0.001

WS02010_D02

WS0126_C10a

EF147943

FL/68

NP_001066879.1, hypothetical protein, Oryza sativa

175

4.4

<0.001

<0.001

WS0155_H06

WS0125_E23

EF147828

FL/215

CAN69111.1, glutathione-S-transferase, V. vinifera

415

4.3

<0.001

<0.001

WS01119_L18

WS01119_L18

EF144906

FL/56

NP_001068325.1, 40S ribosomal protein, O. sativa

182

4.3

<0.001

<0.001

WS0134_F23

WS0134_F23

EF148579

FL/312

CAN79077.1, annexin, V. vinifera

575

4.2

<0.001

<0.001

WS0117_C05

WS0124_M24

EF147756

FL/538

AAA80588.1, calnexin, Glycine max

1231

4.1

<0.001

<0.001

WS0175_A23

WS01125_H02a

EF145504

FL/181

AAT08648.1, ADP-ribosylation factor, Hyacinthus orientalis

587

4.0

0.004

0.014

WS0153_O15

WS0135_A12

EF148616

FL/388

At4g24220, vein patterning 1, A. thaliana

711

4.0

<0.001

<0.001

WS0141_G12

WS01312_A02

EF148234

FL/273

At1g19180, hypothetical protein, A. thaliana

160

4.0

<0.001

0.003

WS0168_D23

WS01230_E07

EF147385

FL/420

ABD32854.1, hypothetical protein, Medicago truncatula

670

4.0

<0.001

0.001

WS0154_B02

WS01228_N21

EF147184

5' trunc./186

At5g07340, calnexin, A. thaliana

251

3.9

<0.001

<0.001

WS01116_D23

WS01116_D23

EF144634

FL/84

At3g60540, sec61beta family protein, A. thaliana

92

3.8

<0.001

<0.001

WS0117_O22

WS0117_O22a

EF146403

FL/68

At1g27330, hypothetical protein, A. thaliana

103

3.5

<0.001

<0.001

WS0122_A01

WS01227_N20

EF147117

FL/399

At1g74210, glycerophosphodiester phosphodiesterase, A. thaliana

606

3.5

<0.001

<0.001

WS0144_K08

WS01119_H21

EF144889

FL/358

ABQ10199.1, cysteine protease, Actinidia deliciosa

594

3.5

<0.001

<0.001

WS0147_I02

WS0125_D08

EF147814

FL/444

AAS79603.1, prephenate dehydratase, Ipomoea trifida

653

3.3

<0.001

0.001

WS0111_C18

WS0125_B22a

EF147800

FL/395

P47916, S-adenosyl methionine synthetase, P. deltoides

785

3.3

<0.001

0.001

WS0151_N14

WS0127_M05

EF148121

FL/485

Q01781, S-adenosylhomocysteine hydrolase, Petroselinum crispum

939

3.3

<0.001

<0.001

WS01212_P09

WS01212_P09

EF146734

FL/161

ABC47922.1, pathogenesis-related protein 1, Malus × domestica

236

3.2

0.005

0.016

PX0015_M10

PX0015_M10

EF144335

n.a.

No protein matches

n.a.

3.2

<0.001

<0.001

WS0111_A20

WS0111_A20

EF144935

FL/360

CAN67616.1, cupin family protein, V. vinifera

474

3.2

<0.001

<0.001

WS0117_P18

WS0117_P18

EF146411

FL/93

NP_001047293.1, hypoxia-responsive family protein, O. sativa

122

3.2

<0.001

<0.001

WS0131_J08

WS0131_J08

EF148502

FL/452

AAA70334.1, omega-3 fatty acid desaturase, Sesamum indicum

708

3.1

<0.001

<0.001

WS0173_J22

WS01229_P15

EF147254

frameshift/441

CAH05011.1, alpha-dioxygenase, Pisum sativum

679

3.1

<0.001

0.002

WS0151_H21

WS01314_F07a

EF148393

FL/505

AAB05641.1, protein disulphide isomerase, R. communis

786

3.1

<0.001

<0.001

WS0141_E06

WS0128_M17

EF148216

FL/338

CAN79663.1, hypothetical protein, V. vinifera

284

3.0

<0.001

<0.001

WS01211_D15

WS01211_D15

EF146643

FL/258

NP_001061550.1, 60S ribosomal protein L7A, O. sativa

398

3.0

0.004

0.012

WS01110_A05

WS01110_A05

EF144530

5' trunc./46

AAT45244.1, EPSP synthase, Conyza canadensis

87

3.0

<0.001

<0.001

WS0122_A21

WS0122_A21

EF147261

FL/349

At3g62600, DNAJ heat shock family protein, A. thaliana

542

3.0

<0.001

<0.001

WS0154_D16

PX0019_K19

EF144475

FL/172

ABL67655.1, cyclophilin, Citrus cv. Shiranuhi

303

3.0

<0.001

<0.001

WS0114_N12

WS0114_N12

EF146003

5' trunc./243

AAU08208.1, chloroplast ferritin precursor, Vigna angularis

357

3.0

0.001

0.007

WS0153_O16

WS0136_K07a

EF148708

FL/113

CAA40072.1, hypothetical protein, P. trichocarpa × deltoides

225

2.9

<0.001

<0.001

WS01117_D04

WS01117_D04

EF144703

FL/137

CAN73155.1, hypothetical protein, V. vinifera

110

2.9

<0.001

<0.001

WS01120_A02

WS01120_A02

EF145080

5' trunc./105

At1g03010, phototropic-responsive NPH3 family protein, A. thaliana

177

2.8

<0.001

0.001

WS0178_L06

WS01211_M01

EF146675

FL/415

NP_001064428.1, no apical meristem transcription factor, O. sativa

98

2.8

<0.001

0.001

WS0143_C23

WS01228_M23a

EF147179

FL/212

ABB89210.1, dehydroascorbate reductase, S. indicum

343

2.7

<0.001

<0.001

WS0127_I09

WS0127_I09

EF148095

FL/235

CAB77025.1, Rho GDP dissociation inhibitor, N. tabacum

294

2.7

0.003

0.012

PX0015_K10

PX0015_K10

EF144326

3' trunc./65

At2g15590, hypothetical protein, A. thaliana

39

2.7

0.001

0.004

WS0152_M05

WS01111_A23

EF144570

FL/125

At1g69230, nitrilase-associated protein, A. thaliana

80

2.7

0.001

0.006

WS0134_H19

WS0134_H19

EF148589

FL/461

At5g28237. tryptophan synthase, A. thaliana

579

2.7

<0.001

0.001

WS0122_P22

WS0122_P22

EF147367

5' trunc./46

AAS89832.1, flavonoid 3-O-glucosyltransferase, Fragaria × ananassa

47

2.6

0.009

0.023

WS0113_E03

WS0113_E03

EF145764

5' trunc./130

At1g73600, phosphoethanolamine N-methyltransferase, A. thaliana

198

2.6

<0.001

0.001

WS02012_L20

WS01212_L02a

EF146720

FL/440

AAV50009.1, N-hydroxycinnamoyl/benzoyltransferase, Malus × domestica

451

2.5

<0.001

0.001

WS0116_I22

WS01119_O01a

EF144919

FL/212

ABB89210.1, dehydroascorbate reductase, S. indicum

360

2.5

<0.001

0.001

WS0128_C01

WS0128_C01

EF148156

FL/205

CAC85245.1, salt tolerance protein, Beta vulgaris

246

2.5

0.001

0.005

PX0011_E19

PX0011_C19

EF144204

FL/341

At1g10840, eukaryotic translation initiation factor subunit 3, A. thaliana

573

2.5

<0.001

0.002

WS0128_M01

WS0128_M01

EF148209

5' trunc./197

ABN08481.1, homeodomain-related, M. truncatula

103

2.4

<0.001

0.003

WS01126_B13

WS01126_B13

EF145551

3' trunc./136

CAN77060.1, ubiquitin activating enzyme, V. vinifera

239

2.4

0.017

0.035

WS01125_E14

WS01125_E14a

EF145493

FL/207

NP_001058535.1, cyclophilin, O. sativa

340

2.4

<0.001

0.001

WS01218_P22

WS01120_G07a

EF145102

FL/170

NP_001050870.1, glycine-rich RNA-binding protein, O. sativa

144

2.4

0.004

0.013

WS01117_L06

WS01117_L06

EF144744

frameshift/136

NP_001046690.1, ribosomal protein L10A, O. sativa

171

2.4

<0.001

<0.001

WS01117_E15

WS01117_E15

EF144711

n.a.

No protein matches

n.a.

2.4

<0.001

0.001

WS01110_A14

WS0122_K19

EF147330

FL/476

AAF18411.1, integral membrane protein, Phaseolus vulgaris

897

2.4

<0.001

<0.001

WS0156_A21

WS0127_G12a

EF148080

n.a.

No protein matches

n.a.

2.4

0.017

0.035

WS0127_G19

WS0127_G19

EF148082

frameshift/251

At4g11640, serine racemase, A. thaliana

354

2.4

<0.001

0.002

WS0112_O04

WS0112_O04

EF145713

5' trunc./566

ABS01352.1, methionine synthase, Carica papaya

1073

2.4

<0.001

0.001

WS0155_E17

WS01212_I06a

EF146705

FL/363

ABM67589.1, flavanone 3-hydroxylase, V. vinifera

645

2.4

0.003

0.012

WS0168_M07

WS0137_H13a

EF148760

FL/62

ABF98145.1, hypothetical protein, O. sativa

57

2.4

<0.001

0.003

WS0119_H18

WS0117_P08

EF146405

5' trunc./188

CAN83141.1, hypothetical protein, V. vinifera

218

2.3

<0.001

0.003

WS0157_L22

WS0128_B17

EF148154

5' trunc./388

CAN76057.1, glucosyltransferase, V. vinifera

411

2.3

0.002

0.008

WS0185_E12

WS0124_A18

EF147646

FL/285

CAH60723.1, aquaporin, P. tremula × tremuloides

488

2.3

0.001

0.007

WS0125_I01

WS0125_I01

EF147858

FL/477

BAA36972.1, flavonoid 3-O-galactosyl transferase, Vigna mungo

442

2.3

0.003

0.011

PX0019_C07

PX0019_C07

EF144380

5' trunc./222

CAN74465.1, hypothetical protein, V. vinifera

369

2.3

0.015

0.033

WS01111_E24

WS0113_P06

EF145877

FL/290

AAN32641.1, short-chain alcohol dehydrogenase, Solanum tuberosum

399

2.3

<0.001

0.003

WS01212_B14

WS01214_D06a

EF146806

FL/363

ABM67589.1, flavanone 3-hydroxylase, V. vinifera

644

2.3

0.003

0.011

WS0181_A04

WS01312_M14

EF148294

frameshift/232

CAN74806, bZIP transcription factor, V. vinifera

152

2.3

0.002

0.009

WS0116_F22

WS0116_F22

EF146228

frameshift/239

At3g05290, mitochondrial substrate carrier protein, A. thaliana

283

2.3

0.004

0.013

WS01121_C12

WS01121_C12

EF145159

FL/216

At2g25110, MIR domain-containing protein, A. thaliana

349

2.3

<0.001

<0.001

WS01214_P11

WS01214_P11

EF146849

FL/219

ABL84692, glutathione S-transferase, V. vinifera

345

2.3

0.002

0.009

WS0128_G16

WS01228_N10

EF147182

FL/207

AAN03471.1, hypothetical protein, G. max

99

2.2

<0.001

<0.001

WS0209_J01

WS0135_O22

EF148667

FL/318

AAG23965.1, endochitinase, Vigna sesquipedalis

461

2.2

0.001

0.004

WS01119_M12

WS01110_H18

EF144553

FL/118

At5g04750, F1F0-ATPase inhibitor protein, A. thaliana

52

2.2

<0.001

<0.001

WS0205_L05

WS01228_D08

EF147142

frameshift/233

AAX85981.1, NAC4 protein, G. max

362

2.2

0.019

0.038

WS0123_D13

WS0137_E08

EF148737

FL/533

At5g58270, STARK1 ATPase, half ABC transporter, A. thaliana

642

2.2

<0.001

<0.001

WS0112_P02

WS0116_L21

EF146273

FL/145

At5g27670, histone 2A, A. thaliana

196

2.2

<0.001

0.002

WS01214_A14

WS01225_E15

EF146945

FL/330

At5g07010, sulfotransferase family protein, A. thaliana

394

2.2

0.002

0.009

WS01211_G15

WS01211_G15

EF146653

FL/507

AAL24049.1, cytochrome P450, Citrus sinensis

677

2.2

<0.001

0.002

WS0123_E09

WS0123_E09

EF147535

FL/210

ABB89210.1, dehydroascorbate reductase, S. indicum

332

2.2

<0.001

<0.001

WS0114_N11

WS0114_N11

EF146002

5' trunc./313

AAF73006.1, NADP-dependent malic enzyme, R. communis

450

2.1

<0.001

<0.001

WS0154_G22

WS0122_L10

EF147335

5' trunc./381

CAN74204.1, hypothetical protein, V. vinifera

535

2.1

0.001

0.005

WS0181_N15

WS0133_H05

EF148536

FL/283

ABG73415.1, chloroplast pigment-binding protein, N. tabacum

496

2.1

<0.001

0.001

WS0131_L08

WS0137_P12a

EF148792

FL/214

NP_001060368.1, emp24/gp25L/p24 transmembrane protein, O. sativa

288

2.1

<0.001

<0.001

WS0124_N24

WS0124_N24

EF147765

FL/584

NP_001048852.1, acyl-activating enzyme 11, O. sativa

750

2.1

0.017

0.036

WS0116_E14

WS0116_E14

EF146213

n.a.

No protein matches

n.a.

2.1

0.001

0.004

WS0128_N06

WS0128_N06

EF148221

FL/257

At4g18260, cytochrome b-561, A. thaliana

294

2.1

0.005

0.016

WS01122_N10

WS01122_N10

EF145286

FL/91

At1g62440, leucine-rich repeat extensin, A. thaliana

107

2.0

0.010

0.025

WS01214_M13

WS01214_M13

EF146841

FL/378

At5g45670, GDSL-motif/hydrolase family protein, A. thaliana

298

2.0

<0.001

0.001

WS01213_H17

WS01213_H17

EF146756

FL/597

At4g34200, phosphoglycerate dehydrogenase, A. thaliana

884

2.0

<0.001

0.003

WS01122_N02

WS01231_J04a

EF147472

FL/196

XP_001334748.1, hypothetical protein, Danio rerio

59

2.0

0.003

0.010

WS0156_F12

WS0118_O10

EF146525

FL/102

At2g18400, ribosomal protein L6, A. thaliana

165

2.0

<0.001

<0.001

  1. aMultiple FLcDNAs match to the same microarray EST, a complete list of matching FLcDNAs is provided elsewhere [see Additional file 2].
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BMC Genomics

ISSN: 1471-2164

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