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Table 2 The list of transcripts associated with cuticle hardening that are up-regulated in intermolt (Cy5) crabs when compared against crabs in the post-molt stage (Cy3).

From: Differential expression profiling of components associated with exoskeletal hardening in crustaceans

Clone IDs
(Accession #)
BLAST results Score (Bits) E value M * t * P-value* Adjusted
P-value*
PpHEM7
(EF110537)
AY861677 Cancer magister hemocyanin AAW57890 hemocyanin C. magister 290
455
6e-75
1e-126
-5.147
-4.716
-4.432
-10.466
-17.112
-14.02
0
0
0
0.004
0.002
0.002
PpHEM3
(EF110533)
AF249297 Callinectes sapidus hemocyanin subunit mRNA
AAW57891 hemocyanin subunit 3 C. magister
807
432
0.0
1e-119
-4.849
-3.951
-16.719
-14.337
0
0
0.002
0.002
PpTRY1
(EF120993)
AB205408 Seriola quinqueradiata mRNA for trypsinogen
CAA75310 trypsin Litopenaeus vannamei
75.8
318
2e-10
2e-85
-4.655
-4.434
-4.193
-4.154
-9.19
-13.924
-11.15
-12.959
0
0
0
0
0.007
0.002
0.004
0.003
PpHEM1
(EF110531)
AY861676 C. magister hemocyanin subunit 1
AAW57889 hemocyanin subunit 1 C. magister
103
335
9e-19
1e-90
-4.473
-4.393
-4.112
-9.907
-15.061
-15.684
0
0
0
0.005
0.002
0.002
PpTRY2
(EF120994)
AAL67442 trypsin Paralithodes camtschaticus 62.0 1e-08 -4.473 -10.021 0 0.005
PpHEM4
(EF110534)
AF249297 C. sapidus hemocyanin subunit mRNA
AAF64305 hemocyanin subunit C. sapidus
870
472
0.0
6e-132
-4.402
-4.295
-4.027
-3.954
-3.784
-3.75
-3.707
-2.331
-14.753
-14.847
-15.206
-14.946
-14.715
-14.898
-12.568
-6.86
0
0
0
0
0
0
0
0.001
0.002
0.002
0.002
0.002
0.002
0.002
0.003
0.018
PpHEM2
(EF110532)
AY861677 C. magister hemocyanin subunit 2
AAW57890 hemocyanin subunit 2 C. magister
176
160
8e-41
1e-47
-4.273 -9.162 0 0.007
PpHEM5
(EF110535)
AF249297 C. sapidus hemocyanin subunit
AAW57893 hemocyanin subunit 5 C. magister
327
195
3e-86
2e-89
-4.18 -12.698 0 0.003
PpHEM6
(EF110536)
AF249297 C. sapidus hemocyanin subunit mRNA
AAW57891 hemocyanin subunit 3 C. magister
807
432
0.0
1e-119
-4.155
-4.083
-3.999
-3.977
-3.946
-3.869
-3.518
-16.298
-11.88
-15.838
-14.718
-15.306
-14.029
-13.331
0
0
0
0
0
0
0
0.002
0.003
0.002
0.002
0.002
0.002
0.003
PpTRY3
(EF120995)
Y15041 PVTRYPSN3 Penaeus vannamei trypsin gene
CAA75311 trypsin Litopenaeus vannamei
63.9
253
6e-07
3e-66
-4.119
-4.017
-3.972
-3.246
-3.225
-10.005
-11.911
-12.269
-8.569
-10.838
0
0
0
0
0
0.005
0.003
0.003
0.008
0.004
PpHEM8
(EF110538)
AF249297 C. sapidus hemocyanin subunit
AAF64305 hemocyanin subunit C. sapidus
95.6
109
3e-16
3e-22
-3.41 -11.878 0 0.003
PpCTRY1
(EF120996)
CAA71673 Chymotrypsin BII L. vannamei 32.7 4.9 -2.935 -9.127 0 0.007
EF120998 AAD16454 clotting protein precursor Pacifastacus leniusculus (crayfish) 38.9 0.10 -2.83 -8.196 0 0.01
PpCTRY2
(EF120997)
HAY12273 H. armigera (cotton bollworm – arthropod) mRNA for putative serine protease (chymotrypsin-like protease)
CAA71672 Chymotrypsin BI Litopenaeus vannamei
50.1
159
0.008
6e-38
-2.433
-2.021
-8.984
-6.564
0
0.001
0.007
0.021
EF120999 CAD20734 carcinin Carcinus maenas (antibacterial protein) 71.2 2e-11 -1.696 -5.514 0.002 0.036
  1. M = log2 fold change in expression, t = t-statistic, and the P value = t-distribution. The adjusted P values were calculated using the False Discovery Rate (FDR) procedure. Negative values of M and t indicate up-regulation in the Cy5 sample (* multiple values represent several cDNAs all forming one contig).