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Table 1 List of probes used to identify the Musa BAC clones sequenced as part of the present study. Estimated copy numbers of these sequences in rice, Sorghum and Musa are indicated for SbRPG (Sorghum bicolor) sequences. MA4 are BAC clones from M. acuminata cv. Calcutta-4 and MBP are BAC clones from M. balbisiana cv. Pisang Klutuk Wulung.

From: Insights into the Musa genome: Syntenic relationships to rice and between Musa species

Probe name and AC number* Putative function Estimated copy number in rice by Blast analysis (Rice genes locus identifier) Estimated copy number in Sorghum by Southern blot analysis Estimated copy number in Musa by Southern blot analysis Number of identified Musa BAC clones Number of Musa BAC fingerprint groups Musa BAC clones sequenced (size) and AC number*
SbRPG132
DQ185891
chlorophyll A-B binding protein type I 6
Os01g41710.1
Os09g17740.1
Os01g52240.1
Os03g39610.1
Os07g37550.1
Os11g13890.2
4 more than 4 23 6 MA4_25J11
(105019 bp)
AC186746
SbRPG373
DQ185892
hypothetical protein 1
Os07g02340.1
1 1 29 2 MA4_64C22
(80932 bp)
AC186752
        MA4_8L21 (115790 bp) AC186748
SbRPG661
DQ185893
thioredoxin 2
Os10g34520.1
Os07g10250.1
2 2–3 20 2 MA4_54B05
(54106 bp)
AC186753
        MA4_78I12 (150982 bp) AC186750
SbRPG748
DQ185894
porphobilinogen deaminase 1
Os07g10250.1
1 1 1 1 MA4_42M13
(29567 bp)
AC186749
SbRPG851
DQ185895
phosphoglycerate kinase 2
Os05g41640.1
Os01g58610.1
2 2–3 12 2 MA4_112I10
(102441 bp)
AC186756
        MA4_106O17
(143796 bp) AC186747
SbRPG854
DQ185896
mitochondrial rieske protein 2
Os04g32660.1
Os02g32120.1
2 2 5 1 MA4_111B14
(146821 bp)
AC186954
CIR257
DQ334868
GA-20 oxidase - - - 6 1 MA4_82I11
(102232 bp)
AC186955
       - MBP_81C12 (142973 bp) AC186754
CIR560
DQ334869
beta 1–3 glucanase - - - 21 1 MA4_54N07
(96443 bp)
AC186751
       - MBP_91N22
(154246 bp)
AC186755
  1. *AC number : accession number.