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Table 2 Top five motifs in 5' intergenic regions of T. parva and T. annulata

From: Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva

 

Consensus

Width

Bits

E-value

Sites

T. parva Motif 1

HDWTYCCCCATVVR

14

16.0

5.7e-472

639

2

WAATGTGTARR

11

13.6

5.2e-414

1199

3

BDRGATTCCAY

11

16.0

8.5e-108

298

4

CCBCBRSARGGAGCY

15

24.2

3.7e-048

39

5

GCTCCCKCYWGGSG

14

26.2

1.2e-019

19

T. annulata Motif 1

WTTCCCCATNND

12

15.5

4.1e-388

615

2

WAATGTGTAAW

11

13.3

1.1e-348

1173

3

TGTTTGTTCTGATGG

15

27.2

7.1e-140

56

4

BDRGATTCCAY

11

15.8

8.8e-103

302

5

GTAATATTTCTGTAA

15

23.7

5.0e-096

62

  1. Motifs are identified by MEME and their consensus sequences are shown here using IUPAC (International union of pure and applied chemistry) nucleic acid codes. Information content in bits is calculated based on the first-order Markov background model. The E-value estimates the number of motifs with the same width and number of occurrence that would have equal or higher likelihood in the same number of random sequences generated by the background model. Sites refer to the number of sequences that MEME used to build each motif model.