Table 2 Bodo-specific hypothetical genes, with evidence of protein domains, transmembrane domains (TMH) signal peptides (SP) and affinities to sequence databases where available.
Clone | Position | Size (bp) | Interpro match | TMH | SP | Best BLASTp match | Best taxonomic match (% amino acid identity) |
|---|---|---|---|---|---|---|---|
14 l 17 | 3085 | 645 | Oxygenase (IPR005123) | Â | Â | Prolyl hydroxylase | Metazoa (53%) |
| Â | 16869 | 1143 | Zn-binding protein (IPR001841) | 1 | Â | Â | Â |
| Â | 21613 | 7356 | Leucine-rich repeat (IPR001611) | 2 | Â | Â | Â |
16 k 02 | 14573 | 1125 | Â | Â | Yes | Â | Â |
| Â | 16273 | 1596 | Â | Â | Yes | GPI-anchored protein | Plantae/Fungi (64%) |
| Â | 18275 | 1212 | Â | Â | Â | Hypothetical protein | Metazoa (50%) |
| Â | 27014 | 1050 | Â | 7 | Yes | Â | Â |
23 g 24 | 391 | 1626 | Pleckstrin-like (IPR001849) | Â | Â | Â | Â |
| Â | 7655 | 2781 | Zinc metallopeptidase (IPR006025) | Â | Â | Â | Â |
| Â | 21361 | 23428 | Â | Â | Â | EF-hand protein | Tetrahymena (47%) |
45 a 09 | 4161 | 535 | Methyltransferase (IPR013216) | Â | Â | Â | Â |
| Â | 30026 | 1134 | Phosphoribulokinase (IPR006083) | Â | Â | Â | Bacteria (50%) |
45 a 12 | 12191 | 1695 | Lipase (IPR008265) | 1 | Â | Â | Â |
| Â | 31394 | 455 | Serine-Threonine protein kinase (IPR017442) | Â | Â | Protein kinase | Metazoa (46%) |
| Â | 41227 | 264 | Nucleotide-sugar transporter (IPR007271) | 3 | Yes | Â | Â |
46 a 11 | 211 | 753 | Endonuclease (IPR001604) | 1 | Yes | Endonuclease | Bacteria (53%) |
| Â | 1166 | 1416 | Thioredoxin (IPR000866) | Â | Â | Nucleoredoxin | Plantae (53%) |
| Â | 12286 | 1092 | Â | Â | Â | Fucosyltransferase | Plantae (36%) |
| Â | 14365 | 765 | Â | Â | Â | Hypothetical protein | Metazoa (55%) |
5 e 15 | 477 | 10617 | Phosphatidylinositol-4-phosphate kinase (IPR003409) | Â | Â | Â | Â |
| Â | 14913 | 1296 | Lyzosomal lipase (IPR006693) | 1 | Â | Lipase | Metazoa (59%) |
| Â | 16510 | 2199 | Serine endopeptidase (IPR001254) | Â | Â | Serine protease | Plantae (46%) |
| Â | 21065 | 546 | ABC transporter (IPR013525) | 4 | Yes | Â | Â |
| Â | 32153 | 2613 | Â | 1 | Â | Â | Â |
| Â | 35286 | 546 | Zinc-finger protein (IPR001841) | Â | Â | Â | Â |
5 m 18 | 5577 | 1857 | Sodium/hydrogen exchanger (IPR006153) | 14 | Yes | Sodium/hydrogen exchanger | Metazoa (50%) |
| Â | 17069 | 321 | Ankyrin repeat protein (IPR002110) | Â | Â | Â | Â |
93 d 02 | 5528 | 1758 | Â | Â | Yes | Â | Â |
| Â | 7529 | 2589 | Chloride channel (IPR0014743) | 9 | Â | Chloride channel | Metazoa (56%) |
| Â | 14924 | 1788 | WD40 repeat (IPR001680) | Â | Â | Hypothetical protein | Plantae (56%) |
93 e 01 | 56 | 5505 | Â | 14 | Â | Â | Â |
| Â | 16439 | 1995 | Forkhead associated protein (IPR000253) | Â | Â | Â | Â |
| Â | 18802 | 4260 | Â | 8 | Yes | Â | Â |
| Â | 24535 | 855 | Protein tyrosine phosphatase (IPR000340) | Â | Â | Protein phosphatase | Plantae (56%) |
96 g 09 | 10627 | 2559 | PDZ protein binding motif (IPR001478) | Â | Yes | Â | Â |
| Â | 16737 | 1242 | Â | 7 | Yes | Â | Â |
| Â | 26182 | 948 | Leucine-rich repeat kinase (IPR001611) | Â | Â | Receptor-type protein kinase | Plantae (54%) |
| Â | 27597 | 483 | Leucine-rich repeat kinase (IPR001611) | Â | Â | Receptor-type protein kinase | Plantae (34%) |