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Table 2 Number and coverage of transposable elements in E. histolytica, E. dispar and E. invadens

From: Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

name completea incompletea coverage (bp) coverage (%)b
Eh_LINE1 88 654 1079630 5.2%
Eh_LINE2 73 442 759971 3.7%
Eh_LINE3 10 87 160940 0.8%
Eh_SINE1 264 181 187972 0.9%
Eh_SINE2 94 162 108195 0.5%
Eh_SINE3 9 40 18851 0.1%
Eh_ERE1 0 777 1014754 4.9%
Eh_ERE2 71 728 733987 3.5%
Eh_MuDR 0 4 2851 < 0.1%
Eh_mariner 0 1 1008 < 0.1%
Eh_TOTAL 609 3047 4068159 19.7%
Ed_LINE1 63 510 839108 3.7%
Ed_LINE2 28 449 506244 2.2%
Ed_LINE3 2 42 46734 0.2%
Ed_SINE1 282 143 208941 0.9%
Ed_SINE2 53 136 73091 0.3%
Ed_SINE3 2 16 2497 < 0.1%
Ed_ERE1 51 536 526451 2.3%
Ed_MuDR 0 4 2075 < 0.1%
Ed_mariner 0 1 1011 < 0.1%
Ed_TOTAL 481 1837 2206152 9.7%
Ei_LINE 2 67 59,308 0.1%
Ei_ERE1 30 227 170,510 0.4%
Ei_DDE 328 2607 1,678,976 4.1%
Ei_mariner 390 1400 822,878 2.0%
Ei_hAT 35 755 464,161 1.1%
Ei_MuDR 49 831 522,116 1.3%
Ei_Polinton 5 126 336,005 0.8%
Ei_piggyBac 14 32 27,894 0.1%
Ei_TOTAL 677 6082 4033163 9.9%
  1. a Repeats were considered complete when their length was at least 90% of the consensus sequence.
  2. b Expressed as percentage of the corresponding genome length.
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