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Table 2 Blastx matches to various databases and alternatively spliced transcripts in each category. Numbers in parenthesis are calculated using a blastx threshold score of 150.

From: A first glimpse at the transcriptome of Physarum polycephalum

Category

 

Number of contigs

more than 1 read

alternatively spliced

% of contigs (no singletons)

All groups

 

960 (640)

629 (439)

105 (75)

16.7 (17.1)

Eukaryote

     
 

All (sum)

1947 (1607)

1139 (1012)

189 (168)

16.6 (16.6)

 

All Eukaryotes

511 (420)

309 (265)

47 (38)

15.2 (14.3)

 

Amoebozoa/Protozoa

370 (323)

210 (199)

38 (29)

18.1 (14.6)

 

not plant

513 (415)

281 (259)

52 (53)

18.5 (20.5)

 

not vertebrate

87 (60)

50 (37)

7 (5)

14.0 (13.5)

 

not plant/vertebrate

58 (54)

39 (33)

8 (6)

20.5 (18.2)

 

plant

204 (182)

129 (120)

18 (22)

14.0 (18.3)

 

vertebrate

204 (153)

121 (99)

19 (15)

15.7 (15.2)

Prokaryote

 

237 (209)

109 (102)

32 (20)

29.4 (19.6)

Physarum specific

 

2451 (3166)

1045 (1383)

179 (243)

17.1 (17.6)

not defined

 

261 (234)

147 (133)

24 (23)

16.3 (17.3)

sum

 

5856

3069

529

17.3