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Table 1 Frequency of compound microsatellites in the whole genome and in the coding sequence (cds).

From: Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites

 

whole genome

coding sequence

species

m.1

c.2

cSSR3

%4

m.d.5

c.d.6

m.1

c.2

cSSR3

%4

m.d.5

c.d.6

H. sap.

1 169 530

59 792

129 848

11.1

413.0

21.1

4 965

104

233

4.7

77.4

1.6

M. mul.

1 178 381

61 407

134 455

11.4

445.3

23.2

3 638

64

139

3.8

71.3

1.3

M. mus.

1 574 180

173 535

398 361

25.3

617.9

68.1

3 995

95

202

5.1

72.5

1.7

R. nor.

1 307 474

133 120

291 304

22.3

527.8

53.7

1 883

92

226

12.0

92.6

4.5

O. anat.

133 984

1 913

3 969

3.0

327.2

4.7

1 535

16

34

2.2

42.8

0.5

G. gal.

233 896

8 532

17 989

7.7

237.5

8.7

1 889

36

77

4.1

58.3

1.1

D. rerio

1 048 258

94 159

225 069

21.5

688.1

61.8

3215

86

180

5.6

72.0

1.9

D. mel.

44 600

714

1 457

3.3

376.9

6.0

4 168

105

213

5.1

145.6

3.7

  1. 1total number of microsatellites in DNA sequence space
  2. 2total number of compound microsatellites in DNA sequence space
  3. 3number of individual microsatellites being part of a compound microsatellite
  4. 4percentage of individual microsatellites being part of a compound microsatellite (cSSR-%)
  5. 5microsatellite density [m./Mbp]
  6. 6compound microsatellite density [c./Mbp]
  7. H. sap.: Homo sapiens; M. mul.: Macaca mulatta; M. mus.: Mus musculus; R. nor.: Rattus norvegicus; O. anat.: Ornithorhynchus anatinus; G. gal.: Gallus gallus; D. rerio: Danio rerio; D. mel.: