From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species
Phytophthora species | SELECTED PRIMERS(a) | |||||
---|---|---|---|---|---|---|
 | I3F-4R | I5F-I6R | I7F-I8R | I9F-I10R | I11F-I12R | I13F-I14R |
P. alni subsp. alni SCRP2 | NS++ 58°C/1.7 mM* | EF216535 No SSR; 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216513 (aag)4 (agg)6 58°C/1.0 mM* | NA+ | EF216477 (agg)4 (aag)5 58°C/1.7 mM* |
P. cambivora SCRP67 | NS++ 58°C/1.7 mM* | NA+ | NS++ 58°C/1.7 mM* | EF216516 (acg)4 (aag)5 (agg)6 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216478 (agg)5 (aag)5 58°C 1.7 mM* |
P. cinnamomi SCRP115 | NS++ 58°C/1.7 mM* | NS++ 58°C/1.7 mM* | NS++ 58°C/1.7 mM* | EF216509 (aag)14 58°C/1.0 mM* | EF216494 (aag)4 58°C/1.7 mM* | NS++ 58°C/1.7 mM* |
P. citricola SCRP130 | NS++ 58°C/1.7 mM* | EF216534 (agc)4; (agc)5 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216520 (aag)4 58°C/1.0 mM* | EF216498 (aag)4 58°C/1.7 mM* | EF216482 (agg)9 (aag)5 58°C/1.7 mM |
P. europaea SCRP622 | NS++ 58°C/1.7 mM* | NS++ 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216512 No SSR 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216476 (agg)5 (aag)5 58°C/1.7 mM* |
P. fragariae var. rubi SCRP333 | NS++ 58°C/1.7 mM* | NA+ | NA+ | EF216500 (acg)4 58°C/1.0 mM* | NA+ | NA+ |
P. ilicis SCRP377 | NS++ 58°C/1.7 mM* | EF216532 (agc)9 58°C/1.0 mM* | NA+ | EF216501 No SSR 58°C/1.0 mM* | EF216495 No SSR 58°C/1.7 mM* | EF216483 (aag)4 (agc)4 58°C/1.7 mM |
P. infestans sc 03.26.3.3 | NS++ 58°C 1.7 mM* | EF216524 (agc)6 (agc)5 58°C/1.0 mM | NS++ 58°C/1.7 mM* | EF216499 (aag)11 58°C/1.0 mM* | EF216487 (acc)8 58°C/1.7 mM* | EF216474 (aag)7 (aag)4 58°C/1.7 mM |
P. inundata SCRP644 | NS++ 58°C/1.7 mM* | NS++ 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216508 No SSR 58°C/1.0 mM* | EF216497 No SSR 58°C/1.7 mM* | NA+ |
P. lateralis SCRP390 | NS++ 58°C/1.7 mM* | EF216527 (agc)4 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216507 No SSR 58°C/1.0 mM* | EF216493 No SSR 58°C/1.7 mM* | EF216481 (agg)5 (aag)4 58°C/1.7 mM* |
P. nemorosa SCRP910 | NS++ 58°C/1.7 mM* | EF216531 (agc)7 58°C/1.0 mM* | NA+ | EF216503 No SSR 58°C/1.0 mM* | EF216492 (aag)4 58°C/1.7 mM* | EF216486 (acg)4 (aag)4 (agc)4 58°C/1.7 mM* |
P. pseudosyringae SCRP674 | NS++ 58°C/1.7 mM* | EF216529 (agc)7 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216502 No SSR 58°C/1.0 mM* | EF216496 (aag)5 58°C/1.7 mM* | EF216485 (acg)4 (aag)4 58°C/1.7 mM* |
P. psychrophila SCRP630 | NS++ 58°C/1.7 mM* | EF216528 (agc)4 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | NA+ | EF216491 (aag)4 58°C/1.7 mM* | EF216484 (aag)4 (agc)4 58°C/1.7 mM* |
P. quercina SCRP541 | NS++ 58°C/1.7 mM* | NS++ 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216506 No SSR 58°C/1.0 mM* | EF216490 (aag)5 58°C/1.7 mM* | EF216480 (agg)6 (aag)4 58°C/1.7 mM* |
P. ramorum SCRP911 | NS++ 58°C/1.7 mM* | EF216525 No SSR 58°C/1.0 mM* | NS++ 58°C/1.7 mM* | EF216505 No SSR 58°C/1.0 mM* | EF216489 (acc)4 58°C/1.7 mM* | EF216479 (aac)7 (agg)9 58°C/1.7 mM |
P. sojae SCRP555 | NS++ 58°C/1.7 mM* | EF216526 No SSR 58°C/1.0 mM* | NA+ | EF216504 (agc)4 58°C/1.0 mM* | EF216488 No SSR 58°C/1.7 mM* | EF216475 (agg)7 (aag)5 58°C/1.7 mM* |