Table 6 Accession numbers and SSRs for selected microsatellites amplified and sequenced from two or more isolates of the same species to evaluate intraspecific variability.
From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species
Phytophthora species | Phytophthora isolates | Primers | SSRs | Accession number |
|---|---|---|---|---|
P. alni subsp. alni | SCRP2 | S23F-S25R | (agg)7; (aag)10; (agg)16; (aag)12; (aag)4 | EF216565 |
| Â | SCRP4 | Â | (agg)7; (aag)10; (agg)16; (aag)12; (aag)4 | EF216567 |
| Â | SCRP8 | Â | (agg)7; (aag)10; (agg)16; (aag)12; (aag)4 | EF216566 |
P. cambivora | SCRP67 | S23F-S25R | (agg)10; (aag)10; (agg)9; (aag)12; (agg)4; (agg)7 | EF216569 |
| Â | SCRP75 | Â | (agg)9; (aag)10; (agg)11; (aag)12; (agg)6 | EF216571 |
| Â | SCRP82 | Â | (agg)10; (aag)10; (agg)9; (aag)12; (agg)5 | EF216570 |
P. cambivora | SCRP67 | S21F-S22R | (agg)4; (aag)5; (aag)4 | EF216581 |
| Â | SCRP80 | Â | (agg)4; (aag)5; (aag)4 | EF216582 |
| Â | SCRP82 | Â | (aag)4; (agg)6; (agg)4 | EF216583 |
P. cambivora | SCRP67 | I9F-I10R | (acg)4; (aag)4; (agg)6 | EF216516 |
| Â | SCRP75 | Â | (acg)4; (aag)4; (agg)6 | EF216519 |
| Â | SCRP80 | Â | (acg)4; (aag)4; (agg)6 | EF216517 |
| Â | SCRP82 | Â | (aag)5; (agg)5 | EF216518 |
P. cinnamomi | SCRP115 | I9F-I10R | (aag)14 | EF216509 |
| Â | SCRP118 | Â | (aag)18 | EF216511 |
| Â | SCRP121 | Â | (aag)12 | EF216510 |
P. pseudosyringae | SCRP674 | I5F-I6R | (agc)7 | EF216529 |
| Â | SCRP734 | Â | (agc)7 | EF216530 |
P. ilicis | SCRP377 | I5F-I6R | (agc)9 | EF216532 |
| Â | SCRP379 | Â | (agc)9 | EF216533 |