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Table 7 Set of primers designed with the 2nd approach (Fig. 1B) to amplify genomic regions potentially containing SSRs in Phytophthora species of clade 7 [2].

From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species

Forward primer

Reverse Primer

SSRs

Source(a)

Gene(b)

S38F

TCGTSTTCTACGTGCTGGAY

S39R

GTAGCACGCGAACATGAASA

(AAC)18

scaffold_26:

667079–667377

E

S40F

TTCCTTAAGTGGGGGAGGAT

S41R

TRTCGGCRTTCAGCTTCTGT

(AAG)4; (AAG)22

scaffold_125:

153837–154222

I

S42F

GCTGCAAGAGTCSCTCGAGTA

S43R

CTTGAGGATGTCRATGAGCA

(AG)21

scaffold_89:

132819–133248

I

S44F

GTRGCTCCTTCCTTAAGTGG

S45R

GTGCTGCASGTAYGGCTTC

(AAG)17

scaffold_75:

344500–344901

I

S46F

GTTGCGCGTGAGGTTCTC

S47R

CAAAAGCTCTGCGTCC

(AG)22

scaffold_67:

282390–282656

I

S48F

YCGGGCSACGGTAGG

S49R

AAGAGCGTRAGCAGGAACC

(AG)18

scaffold_65:

225236–225440

I

S50F

GTGGCTTCCACTGYTGCTG

S51R

YATCAAGGACGTCAACTCGA

(AAC)9; (AACAGC)23

scaffold_48:

118994–119610

E

S52F

CGGGATTTRTCRGATCAGG

S53R

CTGTYTGATCARCTCTCCGCT

(AGG)19

scaffold_46:

153312–153646

E

S56F

CACGAGCTGCAGKCATAYCT

S57R

AGAATKGAMGCGATCGAC

(AGG)16

scaffold_21:

370731–371140

E

S58F

TCGATCRACAGAAGCTGCWA

S59R

GGAGTTCGCCATCAACAACT

(AAG)14

scaffold_19:

606139–606624

I

S60F

GGCGTTTAAAGGCGTTTAAA

S61R

CGTCTTCTTCTTGACGCACA

(AC)18

scaffold_52:

422559–422915

I

S64F

YTTGCGACTAGCAAAGTGG

S65R

CGAACTCCTTGTACAGGATGG

(AG)14

scaffold_56:

179585–179895

E

S66F

GCAGYAGGCCCGGCCT

S67R

GGAGTTCGCCATCAACAACT

(AAG)11

scaffold_12:

130593–130967

E

S68F

CGTCGGTGGAGTAAACATCA

S69R

AAAGGCGTTCGGAGAGYTG

(AG)14

scaffold_66:

83968:84423

I

S70F

ATGACGAGGCAGCAGTTGAC

S71R

AAGAACWGCGTSTACCTGCG

(ATC)13

scaffold_2:

564977–565285

I

S72F

GCARCAATCTTCTGCTTYTTC

S73R

ACACCTSCGTACWTTCGTCA

(AAC)12

scaffold_92:

221631–221935

I

S74F

CGGTGGTACTTGTCGTCCTC

S75R

TSTCCGGCTACATCATCATC

(ATT)12

scaffold_41:

327977–328190

I

S76F

GCATCTACGACCAGATCTACCC

S77R

GTAGACSGAGATGATGGCGT

(AC)8

scaffold_127:

112530–112930

I

  1. (a) = Gene sequences available at http://genome.jgi-psf.org/sojae1/sojae1.home.html.
  2. (b) E = exons; I = Introns