From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species
Forward primer | Reverse Primer | SSRs | Source(a) | Gene(b) |
---|---|---|---|---|
S38F TCGTSTTCTACGTGCTGGAY | S39R GTAGCACGCGAACATGAASA | (AAC)18 | scaffold_26: 667079–667377 | E |
S40F TTCCTTAAGTGGGGGAGGAT | S41R TRTCGGCRTTCAGCTTCTGT | (AAG)4; (AAG)22 | scaffold_125: 153837–154222 | I |
S42F GCTGCAAGAGTCSCTCGAGTA | S43R CTTGAGGATGTCRATGAGCA | (AG)21 | scaffold_89: 132819–133248 | I |
S44F GTRGCTCCTTCCTTAAGTGG | S45R GTGCTGCASGTAYGGCTTC | (AAG)17 | scaffold_75: 344500–344901 | I |
S46F GTTGCGCGTGAGGTTCTC | S47R CAAAAGCTCTGCGTCC | (AG)22 | scaffold_67: 282390–282656 | I |
S48F YCGGGCSACGGTAGG | S49R AAGAGCGTRAGCAGGAACC | (AG)18 | scaffold_65: 225236–225440 | I |
S50F GTGGCTTCCACTGYTGCTG | S51R YATCAAGGACGTCAACTCGA | (AAC)9; (AACAGC)23 | scaffold_48: 118994–119610 | E |
S52F CGGGATTTRTCRGATCAGG | S53R CTGTYTGATCARCTCTCCGCT | (AGG)19 | scaffold_46: 153312–153646 | E |
S56F CACGAGCTGCAGKCATAYCT | S57R AGAATKGAMGCGATCGAC | (AGG)16 | scaffold_21: 370731–371140 | E |
S58F TCGATCRACAGAAGCTGCWA | S59R GGAGTTCGCCATCAACAACT | (AAG)14 | scaffold_19: 606139–606624 | I |
S60F GGCGTTTAAAGGCGTTTAAA | S61R CGTCTTCTTCTTGACGCACA | (AC)18 | scaffold_52: 422559–422915 | I |
S64F YTTGCGACTAGCAAAGTGG | S65R CGAACTCCTTGTACAGGATGG | (AG)14 | scaffold_56: 179585–179895 | E |
S66F GCAGYAGGCCCGGCCT | S67R GGAGTTCGCCATCAACAACT | (AAG)11 | scaffold_12: 130593–130967 | E |
S68F CGTCGGTGGAGTAAACATCA | S69R AAAGGCGTTCGGAGAGYTG | (AG)14 | scaffold_66: 83968:84423 | I |
S70F ATGACGAGGCAGCAGTTGAC | S71R AAGAACWGCGTSTACCTGCG | (ATC)13 | scaffold_2: 564977–565285 | I |
S72F GCARCAATCTTCTGCTTYTTC | S73R ACACCTSCGTACWTTCGTCA | (AAC)12 | scaffold_92: 221631–221935 | I |
S74F CGGTGGTACTTGTCGTCCTC | S75R TSTCCGGCTACATCATCATC | (ATT)12 | scaffold_41: 327977–328190 | I |
S76F GCATCTACGACCAGATCTACCC | S77R GTAGACSGAGATGATGGCGT | (AC)8 | scaffold_127: 112530–112930 | I |