Table 8 Accession numbers and SSRs for GenBank deposited sequences amplified using primers designed with the second approach (Fig. 1B).
From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species
Selected primers(a) | Phytophthora species | ||||
|---|---|---|---|---|---|
| Â | P. alni subsp. alni SCRP2 | P. cambivora SCRP67 | P. europaea SCRP622 | P. fragariae SCRP333 | P. sojae SCRP555 |
S38–39 | EF382833 No SSR | EF382832 No SSR | EF382831 No SSR | EF382830 No SSR | EF382829 (aac)18 |
S40–41 | NS++ | EF382801 (aac)4 | EF382800 No SSR | EF382799 (aac)4 | NS++ |
S42–43 | NS++ | EF382798 (ACG)6 | EF382797 (acg)6; (agg)5 | EF382796 No SSR | EF382795 (ag)21 |
S44–45 | EF382793 (aac)4 | EF382792 (aac)4 | EF382794 No SSR | NS++ | EF382791 (aag)5; (aag)5 |
S50–51 | EF382790 Any SSR | NA+ | EF382789 No SSR | EF382788 No SSR | NS++ |
S52–53 | NA+ | EF382786 No SSR | EF382787 No SSR | NS++ | EF382785 (agg)19 |
S58–59 | EF382784 (aac)4 | EF382783 (aac)4 | EF382782 No SSR | EF382781 (aac)4 | EF382780 (aag)5; (aag)5 |
S64–65 | EF382828 No SSR | EF382827 No SSR | EF382826 No SSR | EF382825 No SSR | EF382824 (ag)14 |
S68–69 | EF382820 (aagg)4 | EF382821 No SSR | EF382822 No SSR | EF382831 (aac)4; (aagg)4 | EF382819 (ag)14 |
S70–71 | EF382815 No SSR | EF382816 No SSR | EF382817 No SSR | EF382818 No SSR | EF382814 (act)13 |
S72–73 | EF382810 No SSR | EF382811 No SSR | EF382812 No SSR | EF382813 No SSR | EF382809 (aac)12 |
S74–75 | NS++ | NS++ | EF382807 No SSR | EF382808 No SSR | EF382806 (aat)12 |
S76–77 | EF382802 No SSR | EF382803 No SSR | NS++ | EF382805 No SSR | EF382804 (ac)8 |