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Table 8 Accession numbers and SSRs for GenBank deposited sequences amplified using primers designed with the second approach (Fig. 1B).

From: Use of genome sequence data in the design and testing of SSR markers for Phytophthora species

Selected
primers(a)
Phytophthora species
  P. alni subsp. alni
SCRP2
P. cambivora
SCRP67
P. europaea
SCRP622
P. fragariae
SCRP333
P. sojae
SCRP555
S38–39 EF382833
No SSR
EF382832
No SSR
EF382831
No SSR
EF382830
No SSR
EF382829
(aac)18
S40–41 NS++ EF382801
(aac)4
EF382800
No SSR
EF382799
(aac)4
NS++
S42–43 NS++ EF382798
(ACG)6
EF382797
(acg)6; (agg)5
EF382796
No SSR
EF382795
(ag)21
S44–45 EF382793
(aac)4
EF382792
(aac)4
EF382794
No SSR
NS++ EF382791
(aag)5; (aag)5
S50–51 EF382790
Any SSR
NA+ EF382789
No SSR
EF382788
No SSR
NS++
S52–53 NA+ EF382786
No SSR
EF382787
No SSR
NS++ EF382785
(agg)19
S58–59 EF382784
(aac)4
EF382783
(aac)4
EF382782
No SSR
EF382781
(aac)4
EF382780
(aag)5; (aag)5
S64–65 EF382828
No SSR
EF382827
No SSR
EF382826
No SSR
EF382825
No SSR
EF382824
(ag)14
S68–69 EF382820
(aagg)4
EF382821
No SSR
EF382822
No SSR
EF382831
(aac)4; (aagg)4
EF382819
(ag)14
S70–71 EF382815
No SSR
EF382816
No SSR
EF382817
No SSR
EF382818
No SSR
EF382814
(act)13
S72–73 EF382810
No SSR
EF382811
No SSR
EF382812
No SSR
EF382813
No SSR
EF382809
(aac)12
S74–75 NS++ NS++ EF382807
No SSR
EF382808
No SSR
EF382806
(aat)12
S76–77 EF382802
No SSR
EF382803
No SSR
NS++ EF382805
No SSR
EF382804
(ac)8
  1. (a) = Primers listed in Table 7 and not reported in this table are those that did not produce any reliable sequence.
  2. NA+ = Isolate-primer combinations that did not produce any amplification or produced complex profiles (two or more fragments).
  3. NS++ = Isolate-primer combinations for which single PCR bands were obtained but direct sequencing did not produced reliable results.