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Table 5 Gene Ontology terms enriched for bimodal genes with "high" or "low" expression within brain, heart, and skeletal muscle tissues in human and mouse.

From: Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality

  

Brain

Heart

Skeletal Muscle

  

Human

Mouse

Human

Mouse

Human

Mouse

CC

actin cytoskeleton

  

high

 

high

high

 

axon

high

high

low

low

low

low

 

basal lamina

 

low

    
 

basement membrane

 

low

 

high

 

high

 

cell junction

high

high

 

low

low

low

 

cell projection

high

high

    
 

collagen

low

low

 

high

high

high

 

cytoplasm

high

 

high

 

high

 
 

cytoskeleton

 

low

high

high

high

high

 

growth cone

high

high

low

   
 

I band

     

high

 

integral to plasma membrane

    

low

 
 

membrane

 

high

  

low

 
 

membrane fraction

   

low

 

low

 

muscle myosin complex

low

   

high

 
 

myosin complex

low

low

   

high

 

plasma membrane

    

low

 
 

postsynaptic membrane

high

high

low

low

 

low

 

proteinaceous extracellular matrix

low

low

high

high

 

high

 

sarcolemma

 

low

 

high

 

high

 

sarcoplasmic reticulum

low

low

high

 

high

high

 

striated muscle thick filament

low

   

high

 
 

synapse

high

high

low

low

low

low

 

synaptic vesicle membrane

     

low

 

troponin complex

 

low

  

high

high

 

Z disc

low

low

high

high

high

high

BP

antigen processing and presentation of peptide antigen via MHC class I

 

low

high

  

high

 

cell adhesion

 

low

high

high

 

high

 

cell differentiation

 

high

    
 

central nervous system development

high

 

low

   
 

cytoskeleton organization and biogenesis

     

high

 

glycogen metabolic process

low

  

high

high

 
 

glycolysis

  

high

high

high

 
 

ion transport

high

high

 

low

 

low

 

muscle contraction

low

low

high

 

high

high

 

muscle development

low

   

high

high

 

nervous system development

high

high

low

 

low

 
 

neuron differentiation

 

high

low

   
 

neuron migration

 

high

    
 

regulation of heart contraction

  

high

high

  
 

regulation of muscle contraction

 

low

   

high

 

regulation of striated muscle contraction

    

high

 
 

regulation of the force of heart contraction

  

high

high

high

 
 

sensory perception of sound

 

high

high

   
 

striated muscle contraction

low

low

high

 

high

 
 

synaptic transmission

high

high

low

low

low

low

 

transport

high

high

 

low

 

low

 

tricarboxylic acid cycle

  

high

high

high

high

MF

actin binding

  

high

 

high

high

 

calcium ion binding

  

high

 

high

high

 

extracellular matrix structural constituent

low

low

high

high

 

high

 

GTPase activity

high

     
 

ion channel activity

 

high

 

low

 

low

 

microfilament motor activity

    

high

 
 

NAD binding

    

high

 
 

protein binding

low

     
 

structural constituent of muscle

low

low

high

 

high

 
 

structural molecule activity

 

low

high

   
  1. The mode of expression is indicated for tissue types where terms are significantly enriched for the set of bimodal genes in the "high" mode or the set of bimodal genes in the "low" mode of expression. Significance was determined from a hypergeometric distribution with cutoff p = 0.05.