Table 1 Mismatch designs
From: Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays
DESIGN | # MMs | MM BASE LOCATIONS |
|---|---|---|
PM | 0 | -- |
Centered | ||
c1 | 1 | 18 |
c3 | 3 | 17–19 |
c5 | 5 | 16–20 |
c7 | 7 | 15–21 |
c9 | 9 | 14–22 |
c11 | 11 | 13–23 |
Staggered | ||
s2 | 2 | 12, 24 |
s3 | 3 | 12, 18, 24 |
s4 | 4 | 6, 12, 18, 14 |
s5 | 5 | 6, 12, 18, 24, 30 |
s7 | 7 | 6, 12, 15, 18, 21, 24, 30 |