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Figure 3 | BMC Genomics

Figure 3

From: Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

Figure 3

Phylogenetic reconstruction based on nucleotide sequence of fulllength proviral FIV including env and separate analysis of env. A. Phylogenetic tree of concatenated combined data of coding genes gag, pol vif, orfA and env. B. Phylogenetic tree of env sequences only. Shown is the maximum likelihood tree (ML) identical to tree topology using maximum parisimony (MP) and minimum evolution (ME) for each gene region. See methods and Additional file 3 for specific parameters as implemented in PAUP ver 4.10b. All nodes supported by 100% bootstrap proportions in ME, MP and ML analyses except for relative positions of FIV Fca subtypes which were supported by bootstraps >50% but less than 100% within the FIV Fca clade.

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BMC Genomics

ISSN: 1471-2164

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