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Table 2 Estimates of genetic divergence of FIV genes.

From: Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

  

FIV GENE

  

Gag

Pol

Vif

OrfA1

Env

Genetic distance

      
  

Nucleotide % Genetic Distance (GTR)

Average Pairwise (N = 8)

 

65.8

60.3

100*

100*

100*

Selected comparisons

      
 

FIV Ple B vs FIV Ple E

20.3

20.4

33.1

27.9

100*

 

FIV Ple B vs FIV Oma

28.8

29.3

44.3

55.8

42.7

 

FIV Ple B vs FIV Fca C

55.6

53.5

100*

100*

100*

 

FIV Ple E vs FIV Oma

32.9

28.1

36.7

61.3

100*

 

FIV Ple E vs FIV Fca C

61.4

51.4

79.3

100*

64.4

  

Amino Acid % Genetic Distance (Pam-Dayhoff2)

Average Pairwise (N = 8)

 

53.2

44.1

100*

100*

100*

 

FIV Ple B vs FIV Ple E

9.4

10.5

36.2

24.4

100*

 

FIV Ple B vs FIV Oma

24.8

20.1

59.1

58.4

42.8

 

FIV Ple B vs FIV Fca C

47.6

38.2

100*

100*

100*

 

FIV Ple E vs FIV Oma

25.3

19.9

42.1

68.3

100*

 

FIV Ple E vs FIV Fca C

46.2

37.9

91.9

100*

79.7

  1. * 100% genetic distance means sufficient homology present to create alignment, but no meaningful phylogenetic associations are detected.
  2. 1 FIVPco A not included as no homologous OrfA identified.
  3. 2 See Methods
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BMC Genomics

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