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Figure 3 | BMC Genomics

Figure 3

From: All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

Figure 3

A) Binding of RNAP vs. H3K9me2 (R = -0.50) in mouse tissue culture keratinocytes. B) 8-mer-association-with-H3K9me2 for 12,208 abundant 8-mers, calculated for 14,790 promoters between -1,000 bp and +500 bp; CpG containing 8-mers are noted in black. C-E) 8-mer-association-with-RNAP vs. 8-mer-association-with-H3K9me2. C) All 8-mers. The association-with-RNAP and the association-with-H3K9me2 for the core promoter elements at their unique position in promoters is presented for TATA (TATAWAAR), INR (YYANWYY) and DPE (RGWYV). D) 8-mers without a CpG. E) 8-mers with a CpG.

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BMC Genomics

ISSN: 1471-2164

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