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Table 1 Association of the 10 localized motifs with RNAP binding and mRNA expression.

From: All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

Motif Sequence 8-mer-association-with-RNAP 8-mer-association-with-mRNA expression
BoxA TCTCGCGA 1.30 2.50
NRF-1 GCGVTGCG 1.24 2.44
ETS VCCGGAARY 1.21 2.39
CRE TGACGTCA 1.19 2.32
SP-1 CCCCGCCC 1.14 2.38
E-Box YCACGTGA 1.10 2.28
CCAAT RRCCAATSR 1.04 2.27
KLF CCCCTCCC 1.04 2.28
TATA TATAAAD 0.96 2.22
CRE-T TGATGTCA 0.90 2.17
  1. Column one contains the name of the motif; column two contains the DNA sequence of the motif; column three is the 8-mer-association-with-RNAP for promoters (-1,000 bp to +500 bp) commonly bound by RNAP in the three tissues examined ranked in order by association; column four is 8-mer-association-with-mRNA-expression.