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Figure 6 | BMC Genomics

Figure 6

From: Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci

Figure 6

Phylogram tree of the TRG loci enhancer-like sequences. The enhancer-like sequences present in the ovine TRG loci were identified analyzing the regions of similarity between the human enhancer region (position 140573–141360 of the TRG locus contig [GenBank: NG_001336] [GenBank: AC006033]) and the entire ovine TRG loci by using the PipMaker program. Human (3'CH) and ovine (3'C5, 3'C3, 3'C1, 3'C2, 3'C6, 5'V5-1, 5'V2-1, 5'V9-1) enhancer-like sequences were multialigned. The phylogenetic tree has been constructed on 506 ungapped sites of the enhancer alignment by using the PAUP* software with the Neighbor Joining method on GTR distances. Significant bootstrap values (>50%) over 1,000 replicates are also shown.

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BMC Genomics

ISSN: 1471-2164

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