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Table 1 NsLtp genes identified in the Oryza sativa subsp. japonica genome and features of the deduced proteins. Identical proteins refer to their relative redundant form. A cluster of tandem duplication repeats is indicated by a vertical line before the gene names (see also Figure 1).

From: Genome-wide analysis of the rice and arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining

nsLtp gene

locus/model

intron

signal peptide

mature protein

  

bp

AA

AA

MM

pI a

Type I

      

OsLtpI.1

Os01g12020.1

103

24

99

10212

4.36

OsLtpI.2

Os01g60740 b

86

27

93

9464

10.55

OsLtpI.3

Os03g59380.1

94

33

91

9085

12.07

OsLtpI.4

Os05g40010.1

372

30

99

9780

12.05

OsLtpI.5

Os06g06340.1

100

28

98

10069

9.84

OsLtpI.6

Os06g34840.1

2740

27

120

12297

3.92

OsLtpI.7

Os08g03690.1

547

27

93

9621

9.90

|OsLtpI.8

Os11g02330 c

106

27

92

9336

10.25

|OsLtpI.9

Os11g02350.1

90

28

93

9437

10.89

|OsLtpI.10

Os11g02379.1 d

114

25

91

8895

11.81

|OsLtpI.11

Os11g02379.2

89

26

92

8916

10.55

|OsLtpI.12

Os11g02400.1

106

26

92

9031

11.50

|OsLtpI.13

Os11g02424.2

709

26

92

9104

11.50

OsLtpI.14

Os11g24070.1

116

25

92

9147

12.20

|OsLtpI.15

Os12g02290.1

133

27

OsLTPI.8

|OsLtpI.16

Os12g02300.1

90

OsLTPI.9

|OsLtpI.17

Os12g02310.1

102

25

92

8930

10.55

|OsLtpI.18

Os12g02320.1

138

25

91

8909

11.81

|OsLtpI.19

Os12g02330.1

106

26

OsLTPI.12

|OsLtpI.20

Os12g02340.1

713

26

OsLTPI.13

Type II

      

|OsLtpII.1

Os01g49640.1

none

26

77

8119

11.98

|OsLtpII.2

Os01g49650.1

none

36

76

7987

11.28

OsLtpII.3

Os03g02050.1

none

20

76

7549

11.90

OsLtpII.4

Os05g47700.1

none

27

67

7066

10.16

OsLtpII.5

Os05g47730.1

none

27

69

7270

10.66

OsLtpII.6

Os06g49190.1

none

27

67

6967

10.64

|OsLtpII.7

Os10g36070.1

none

26

74

7613

9.84

|OsLtpII.8

Os10g36090.1

none

26

74

7659

9.84

|OsLtpII.9

Os10g36100 e

none

26

75

7774

9.84

|OsLtpII.10

Os10g36110.1

none

25

75

7926

9.84

|OsLtpII.11

Os10g36160.1

none

25

69

7382

7.06

|OsLtpII.12

Os10g36170.1

none

24

67

6890

11.90

OsLtpII.13

Os11g40530.1

none

36

74

7665

12.14

Type III

      

OsLtpIII.1

Os08g43290.1

84

26

68

6744

7.84

OsLtpIII.2

Os09g35700.1

107

26

69

6839

7.84

Type IV

      

|OsLtpIV.1

Os01g68580.1

none

29

82

8908

10.65

|OsLtpIV.2

Os01g68589.1

none

25

78

8291

9.90

OsLtpIV.3

Os07g18750.1

none

28

76

8073

7.84

OsLtpIV.4

Os07g18990.1

none

23

81

8420

9.86

Type V

      

OsLtpV.1

Os01g62980.1

97

27

91

9390

12.05

|OsLtpV.2

Os04g33920.1

290

22

94

9608

10.22

|OsLtpV.3

Os04g33930.2

419

26

97

9940

11.28

OsLtpV.4

Os05g06780.1

676

24

93

9497

9.69

Type VI

      

|OsLtpVI.1

Os01g58650.1

2851

20

103

10909

4.48

|OsLtpVI.2

Os01g58660.1

92

23

89

9876

9.45

OsLtpVI.3

Os10g05720.2

440

28

81

8724

9.56

OsLtpVI.4

Os11g29420.1

791

29

96

10176

6.00

Type VII

      

OsLtpVII.1

Os11g37280.1

595

27

105

10781

5.32

Type VIII

      

OsLtpVIII.1

Os06g49770 f

221

30

102

9594

9.79

nsLTPY

      

OsLtpY.1

Os03g44000.1

1088

24

109

12073

9.69

OsLtpY.2

Os07g27940.1

148

27

107

10892

11.98

OsLtpY.3

Os11g34660 g

825

27

104

11394

5.50

  1. AA, number of amino acids; MM, molecular mass in Dalton; pI, isoelectric point.
  2. a cysteine residues were not taken into account in the pI calculation.
  3. b using the transcript structure Os01g60740.2.
  4. c annotations curated (strand: +1; exon 1 start: 679124, end: 679473; exon 2 start: 679580, end: 679589).
  5. d annotations curated (strand: +1; exon 1 start: 702105, end: 702445; exon 2 start: 702560, end: 702569).
  6. e annotations curated (strand: +1; exon start: 18974249, end: 18974554).
  7. f annotations curated (strand: +1; exon 1 start: 30113033, end: 30113426; exon 2 start: 30113648, end: 30113652).
  8. g annotations curated (strand: +1; exon 1 start: 19789864, end: 19790209; exon 2 start: 19791035, end: 19791084).
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