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Table 1 Annotation of ESTs and unigenes (assembled EST clusters)

From: Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

ESTs submitted to GenBank

Library

Abbrev

A. palmata

M. faveolata

Spawned eggs1

SE

4018

201

Early planulae2

EP

2114

408

Late planulae (uninfected2

LPU

3111

1125

Late planulae (infected)

LPI

3323

559

Adult colony

AC

2022

1561

EST Unigene sets

   

Total # cDNAs

 

8524

2273

# unigenes

 

4980

1732

Average # cDNAs/unigene

 

1.94

1.41

Unigene Blast annotations (1e-5)

   

% nr blastx hits

 

31%

21%

% swissprot hits

 

25%

17%

% GO hits

 

26%

17%

Unigenes with no blast hits

   

# encoding > 300 nt ORF

 

892

300

# encoding > 300 nt ORF with M

 

574

160

# ORFs + SignalP NN/HMM

 

97/111

22/28

  1. 1A. palmata 96 hr and M. faveolata 60 hr post fertilization
  2. 2A. palmata 15 days and M. faveolata 13 days post fertilization
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BMC Genomics

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