Table 2 TPF and FPF values for all the 60 GO terms in the training data

mitochondrion inheritance

4

2

2

0.5

0.006802721

mitochondrial genome maintenance

12

5

7

0.416666667

0.024475524

reproduction

3

3

0

1

0

biological process unknown

5

3

2

0.6

0.006825939

ribosomal chaperone activity

4

2

2

0.5

0.006802721

high affinity zinc uptake transporter activity

8

8

0

1

0

low-affinity zinc ion transporter activity

3

2

1

0.666666667

0.003389831

thioredoxin

8

0

8

0

0.027586207

alpha-1,6-mannosyltransferase activity

3

0

3

0

0.010169492

trans-hexaprenyltranstransferase activity

5

0

5

0

0.017064846

vacuole inheritance

3

3

0

1

0

single strand break repair

7

3

4

0.428571429

0.013745704

single-stranded DNA specific

3

2

1

0.666666667

0.003389831

phosphopyruvate hydratase complex

3

1

2

0.333333333

0.006779661

lactase activity

4

3

1

0.75

0.003401361

alpha-glucoside transport

6

1

5

0.166666667

0.017123288

regulation of DNA recombination

12

7

5

0.583333333

0.017482517

regulation of mitotic recombination

14

3

11

0.214285714

0.038732394

negative regulation of recombinations

7

1

6

0.142857143

0.020618557

mitotic spindle elongation

3

1

2

0.333333333

0.006779661

maltose metabolism

3

0

3

0

0.010169492

maltose biosynthesis

3

2

1

0.666666667

0.003389831

maltose catabolism

6

5

1

0.833333333

0.003424658

alpha-1,2-mannosyltransferase activity

6

0

6

0

0.020547945

ribosomal large subunit assembly

9

3

6

0.333333333

0.020761246

ribosomal small subunit assembly

4

0

4

0

0.013605442

mannosyltransferase activity

11

7

4

0.636363636

0.013937282

mannosylphosphate transferase activity

5

2

3

0.4

0.010238908

cell wall mannoprotein biosynthesis

4

2

2

0.5

0.006802721

alpha-1,3-mannosyltransferase activity

3

3

0

1

0

adenine deaminase activity

9

8

1

0.888888889

0.003460208

acyl binding

8

4

4

0.5

0.013793103

acyl carrier activity

3

2

1

0.666666667

0.003389831

very-long-chain fatty acid metabolism

10

1

9

0.1

0.03125

plasma membrane long-chain

4

3

1

0.75

0.003401361

low affinity iron ion transport

3

0

3

0

0.010169492

transition metal ion transport

13

5

8

0.384615385

0.028070175

protein targeting to Golgi

6

2

4

0.333333333

0.01369863

ascorbate stabilization

6

0

6

0

0.020547945

autophagic vacuole formation

8

3

5

0.375

0.017241379

autophagic vacuole fusion

5

2

3

0.4

0.010238908

Rieske iron-sulfur protein

6

2

4

0.333333333

0.01369863

peptidyltransferase activity

13

5

8

0.384615385

0.028070175

tRNA binding

6

1

5

0.166666667

0.017123288

urea cycle

3

2

1

0.666666667

0.003389831

urea cycle intermediate metabolism

13

1

12

0.076923077

0.042105263

citrulline metabolism

4

0

4

0

0.013605442

argininosuccinate metabolism

4

0

4

0

0.013605442

ribosome export from nucleus

4

4

0

1

0

ribosomal large subunit export from nucleus

6

3

3

0.5

0.010273973

ribosomal small subunit export from nucleus

3

2

1

0.666666667

0.003389831

protein import into nucleus, docking

5

2

3

0.4

0.010238908

protein import into nucleus, translocation

7

1

6

0.142857143

0.020618557

protein import into nucleus, substrate release

3

3

0

1

0

acyl-CoA binding

3

2

1

0.666666667

0.003389831

L-ornithine transporter activity

3

2

1

0.666666667

0.003389831

mitochondrial ornithine transport

12

4

8

0.333333333

0.027972028