Affymetrix tiling arrays | #UniqSeq | #Seq. MEntries | #Query Entries | #Seq. MGenomeMatches | #Seq.NoGenomeMatch | #Total Entries |
---|
Human ENCODE 1.0a | 721,043 | 14,322 | 756,555 | 16,444 | 506 | 884,634 |
Human Chr21/22a | 979,553 | 21,930 | 1,054,324 | 49,316 | 75 | 1,627,746 |
Human Promoterb | 4,220,999 | 40,099 | 4,275,079 | 251,460 | 2,537 | 5,706,819 |
Human Tiling 1.0 & 2.0b | 41,370,900 | 301,947 | 41,782,720 | 1,215,226 | 13,120 | 48,332,137 |
Mouse Tiling 1.0 & 2.0c | 38,788,060 | 431,551 | 39,576,383 | 993,890 | 437,877 | 51,036,801 |
Mouse Promoterc | 4,096,798 | 30,835 | 4,154,546 | 192,119 | 37,483 | 5,716,068 |
Arabidopsis thaliana 1.0d | 3,046,178 | 7,275 | 3,053,686 | 164,728 | 0 | 3,772,912 |
- Table head line:
- #UniqSeq: Number of unique 25-mer in the original BPMAP file
- #Seq.MEntries: Number of 25-mer with multiple spots in the array
- #QueryEntries: Number of array spots in the original BPMAP file
- #Seq.MGenomeMatches: Number of 25-mer with multiple genomic copies
- #Seq.NoGenomeMatch: Number of 25-mer with no match in the genome
- #TotalEntries: Number of total entries in the xMAN mapping
- aThe original Affymetrix probe mapping is from the NCBIv33 human genome. The new xMAN probe mapping is based on NCBIv35 human genome.
- bThe original Affymetrix probe mapping is from the NCBIv34 human genome. The new xMAN probe mapping is based on the NCBIv35 human genome.
- cThe original Affymetrix probe mapping is from the NCBIv33 mouse genome. The new xMAN probe mapping is based on the NCBIv35 mouse genome.
- dBoth the original Affymetrix probe mapping and xMAN probe mapping are based on the TIGRv5 Arabidopsis genome.